PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G017566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | SRS | ||||||||
Protein Properties | Length: 269aa MW: 29785.9 Da PI: 8.9217 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 95.4 | 1.2e-29 | 9 | 61 | 5 | 57 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57 +++CqdCGnqakk+C+++RCRtCCks+gf+C+th+kstWvp ++rr+r+++ HL.SW.v1.0.G017566.1 9 SSRCQDCGNQAKKECVYMRCRTCCKSKGFQCQTHIKSTWVPLYRRRHRHHHRL 61 679*********************************************77654 PP | |||||||
2 | DUF702 | 65.8 | 1.4e-20 | 61 | 122 | 98 | 153 |
DUF702 98 keletsslPeevsseavfrcvrvss......vddgeeelaYqtavsigGhvfkGiLydqGle 153 e e++++P+ev+++a f+ vrvss vd++++++aYqtavsigGh+fkGiLydqGl+ HL.SW.v1.0.G017566.1 61 LEEEAQNFPPEVKATATFHVVRVSStvnvngVDQNHDQYAYQTAVSIGGHLFKGILYDQGLQ 122 5677889**************9975444444899**************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.9E-26 | 10 | 64 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.1E-28 | 12 | 53 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 3.9E-17 | 64 | 122 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 2.2E-19 | 68 | 121 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MMMRQVSLSS RCQDCGNQAK KECVYMRCRT CCKSKGFQCQ THIKSTWVPL YRRRHRHHHR 60 LEEEAQNFPP EVKATATFHV VRVSSTVNVN GVDQNHDQYA YQTAVSIGGH LFKGILYDQG 120 LQPNTNTTSS SNYTVTGAGD RTTTSAGAGG FNHRNHDHHG QQQQLPIDYF VSVKSHHHDH 180 QTGGVIGTVG SSASATYLTA NISSSSLVAN AEDHHHHHHH QNHHHQPLNM FGSSSTTTTT 240 TSTCPILFPS SNAFINNPGM QFFPSRKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5E5G3 | 8e-61 | A0A2P5E5G3_PARAD; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 1e-39 | SHI-related sequence3 |