PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 525aa    MW: 56759.1 Da    PI: 7.9812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017510.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.5e-34236292259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  HL.SW.v1.0.G017510.1 236 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSL-DGQVTEIIYKGQHNHQ 292
                           8****************************************.***************8 PP

2WRKY107.46.9e-34411469159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  HL.SW.v1.0.G017510.1 411 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 469
                           59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-30224294IPR003657WRKY domain
PROSITE profilePS5081124.157230294IPR003657WRKY domain
SuperFamilySSF1182903.01E-26233294IPR003657WRKY domain
SMARTSM007743.6E-37235293IPR003657WRKY domain
PfamPF031064.3E-26236292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37396471IPR003657WRKY domain
SuperFamilySSF1182909.42E-30403471IPR003657WRKY domain
PROSITE profilePS5081138.836406471IPR003657WRKY domain
SMARTSM007741.3E-39411470IPR003657WRKY domain
PfamPF031063.4E-26412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAENQHQQQP PPSKSTGPPR PTITLPPRTS FETLFNGGGG GGSSGAGPGV GFSPGPMTLV  60
SSFFSESEEC KSFSQLLAGA MTPSATRTNF PIGDQPSSGG ADADFRFNQN RPSGLTISQS  120
PFFSIPPGLS PAGLLDSPGL FSPGQGPFGM SHQQVLAQVT AQAAQSHSEY LTSLSSALTA  180
PMAQLPPFST TNAATQQEVP SSMSDSSIAV KESSDISHNP DPKSHSSSFT ADKPNDDGYN  240
WRKYGQKQVK GSEFPRSYYK CTHPSCPVKK KVERSLDGQV TEIIYKGQHN HQPPKNKQRG  300
KDNGNSSGNS SVQGNLDLAS QVQSGYFNKP KEGTSSYSVL RMDQESSQAT HDHLSGTSDS  360
EEVGDGEEKD EDEPEAKRRS TEVRYSEPAS SHKTVTEPRI IVQTTSEVDL LDDGYRWRKY  420
GQKVVKGNPY PRSYYKCTTP GCNVRKHVER ASTDPKAVIT TYEGKHNHDV PASKTSSHNT  480
ANNNSSNSNQ RMQNTGGLNN KMDLRNRSQQ QPIGHLRLKE EQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-44236472878Probable WRKY transcription factor 4
2lex_A6e-44236472878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836361.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-179WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2P5G0B30.0A0A2P5G0B3_TREOI; WRKY domain containing protein
STRINGXP_008221558.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-130WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]