PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G017510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 525aa MW: 56759.1 Da PI: 7.9812 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.4 | 3.5e-34 | 236 | 292 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnh+ HL.SW.v1.0.G017510.1 236 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSL-DGQVTEIIYKGQHNHQ 292 8****************************************.***************8 PP | |||||||
2 | WRKY | 107.4 | 6.9e-34 | 411 | 469 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+ HL.SW.v1.0.G017510.1 411 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 469 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-30 | 224 | 294 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.157 | 230 | 294 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 233 | 294 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-37 | 235 | 293 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 236 | 292 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-37 | 396 | 471 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-30 | 403 | 471 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.836 | 406 | 471 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-39 | 411 | 470 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-26 | 412 | 469 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MAENQHQQQP PPSKSTGPPR PTITLPPRTS FETLFNGGGG GGSSGAGPGV GFSPGPMTLV 60 SSFFSESEEC KSFSQLLAGA MTPSATRTNF PIGDQPSSGG ADADFRFNQN RPSGLTISQS 120 PFFSIPPGLS PAGLLDSPGL FSPGQGPFGM SHQQVLAQVT AQAAQSHSEY LTSLSSALTA 180 PMAQLPPFST TNAATQQEVP SSMSDSSIAV KESSDISHNP DPKSHSSSFT ADKPNDDGYN 240 WRKYGQKQVK GSEFPRSYYK CTHPSCPVKK KVERSLDGQV TEIIYKGQHN HQPPKNKQRG 300 KDNGNSSGNS SVQGNLDLAS QVQSGYFNKP KEGTSSYSVL RMDQESSQAT HDHLSGTSDS 360 EEVGDGEEKD EDEPEAKRRS TEVRYSEPAS SHKTVTEPRI IVQTTSEVDL LDDGYRWRKY 420 GQKVVKGNPY PRSYYKCTTP GCNVRKHVER ASTDPKAVIT TYEGKHNHDV PASKTSSHNT 480 ANNNSSNSNQ RMQNTGGLNN KMDLRNRSQQ QPIGHLRLKE EQIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-44 | 236 | 472 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-44 | 236 | 472 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018836361.1 | 0.0 | PREDICTED: probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-179 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A2P5G0B3 | 0.0 | A0A2P5G0B3_TREOI; WRKY domain containing protein | ||||
STRING | XP_008221558.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-130 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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