PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017480.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 492aa    MW: 53198.5 Da    PI: 9.6672
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017480.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.3e-204085449
                          -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           n+sn qvtfskRr g++KKA+EL++LC+++ a+i+fs+  +++ +
  HL.SW.v1.0.G017480.1 40 ANESNLQVTFSKRRSGLFKKASELCTLCGVDLAIIVFSPGRRVFSF 85
                          599***********************************99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.8292989IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-242988IPR002100Transcription factor, MADS-box
CDDcd002652.15E-3030106No hitNo description
SuperFamilySSF554558.63E-2330106IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-143151IPR002100Transcription factor, MADS-box
PfamPF003194.5E-233985IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-145166IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-146687IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAMDNLIINN ENENENDNNN NNPNKRVSRG RQVVAMMKMA NESNLQVTFS KRRSGLFKKA  60
SELCTLCGVD LAIIVFSPGR RVFSFGHSSV NLVIDRYLNP ENYRMTSQVN SATLQQVEAH  120
RNANVRDLNQ KLSHVMEQLD VERKRSSELK KARKARVSLY WWEAPVEALN DLAHLQYLKS  180
AMETLKKATS QQADQILIQT TTNANSLLPP NFNNINVNTP SFYGAVTTVG GGGNGSERGL  240
PSSAAAFPNQ GGAGKMLQQP NNNYRYYNKN NNNNNNNDNN VGEANSSSAG TSTDIPHLQA  300
AITSGAGSVN HVNMPHIPQM QAMNSGGIVN NHVNLQPHMQ VAFGGGSTVN HVNLPPHMQV  360
NNSSGGGGGG VNHINFSPMP HHMQKDSAPA GNTNHINMSA MPHMQAKSSP AAASSVVINH  420
FNMSPMPHMQ QPNTCAPAPG TVNHVNQLPP MQLPMLPQSL PPSSQLLSQQ SNPQGTHHAL  480
NNNVGCGHGF F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-53AGAMOUS-like 62