PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G017392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 421aa MW: 46098.1 Da PI: 6.9591 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.00059 | 280 | 318 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq HL.SW.v1.0.G017392.1 280 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 318 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.312 | 268 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.09E-6 | 278 | 322 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-10 | 278 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-7 | 282 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MNRAGVLQQS SPVQQMMAAG NPNWWNYNTM RPPTQPVVLP SPSFLYPQFI PTNTATTTTT 60 TTTTTSNSSS SNSSANSSHL ELPNMPSWHD NNQDQLPESW SQLLLGGLVG EEEKAINMMN 120 HFQVKKLENW EDHDNQHNHH HHTHPHPHQM LSNTTQASNA SVVDVKQENT AAYVYGHGNQ 180 EYEPAKLGSP WLSPHHQHQL IMAASNSNSS PKSSCVTSFS SNMLDFSNIK PDHRTTTTTT 240 HPPPLLQDRS SECNSTATEG APLKKARVQP SSTQTTFKVR KEKLGDRITA LHQLVSPFGK 300 TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQQ SVHGERNCMF PEDPGQLLND 360 NCMKRKGAPD QQDSLEEPKK DLKSRGLCLV PVSCTLQVGS DNGADYWAPA LGGGGGGGFR 420 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010100638.1 | 1e-179 | transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 1e-101 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2P5BP32 | 0.0 | A0A2P5BP32_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein | ||||
STRING | XP_010100638.1 | 1e-178 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 2e-93 | bHLH family protein |
Publications ? help Back to Top | |||
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