PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017125.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 395aa    MW: 43480.2 Da    PI: 8.1647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017125.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13322367655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  HL.SW.v1.0.G017125.1 322 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 367
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16319382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.54E-12320369No hitNo description
Gene3DG3DSA:4.10.280.109.7E-15321379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-10322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSSHHQQHQ NHQPNSGLLR YRSAPSSLFV NFSGNGDCGV NNNNKNSFSM EGSDSERLFS  60
RFVNYSGTND SESSPPSFQD LDDKSSVMAA QQQRYSGLPP HYPRQSSNMS GSALDNGSFG  120
LVGSMAMDSH TQPKSVNSNL VRQSSSPAGL FSHISLPNGY ATIKGAGNYG GLNGSHGEVS  180
PPPNRLKSQL SFSPRLPSLG ILSQISEVES EHLEANTLDE EKLGNENGEA RFFGSGFSFG  240
SWNDSSNFPD SYGALRRDQD ISRKLCSSTQ NEEMGNRIHL LSHHLSLPKT SADVTMEKFL  300
HFQDAVPCKV RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV  360
EYIKDLQKQF KTLSDSRANC KCLNMQKAIP NQVV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899049.10.0transcription factor bHLH130 isoform X1
TrEMBLA0A2P5F1I40.0A0A2P5F1I4_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010111430.11e-169(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-90bHLH family protein