PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017113.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 119aa    MW: 13859.6 Da    PI: 10.4755
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017113.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-192883156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          r++R ++++eq++ L + Fe+++++ +e++ +LA++lg++ rqV vWFqNrRa+ k
  HL.SW.v1.0.G017113.1 28 RKRRLRLSEEQVNFLARNFESEQKLAQERKDRLASELGIDPRQVAVWFQNRRARLK 83
                          89****************************************************88 PP
2HD-ZIP_I/II104.49.2e-3430113285
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                           +++rls+eqv++L ++Fe+e+kL +erK +la+eLg++prqvavWFqnrRAR k+k+lE++y++Lk+ +++++++++ Le+e +
  HL.SW.v1.0.G017113.1  30 RRLRLSEEQVNFLARNFESEQKLAQERKDRLASELGIDPRQVAVWFQNRRARLKAKKLEEEYSSLKKVHESVVHDQRGLESEFA 113
                           6789***************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.5242585IPR001356Homeobox domain
SMARTSM003896.1E-162789IPR001356Homeobox domain
SuperFamilySSF466892.31E-172893IPR009057Homeodomain-like
CDDcd000861.02E-112886No hitNo description
PfamPF000461.4E-162883IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-193093IPR009057Homeodomain-like
PRINTSPR000311.1E-55665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000311.1E-56581IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MSNTERETKE TLRGTKNKSA KEESVLARKR RLRLSEEQVN FLARNFESEQ KLAQERKDRL  60
ASELGIDPRQ VAVWFQNRRA RLKAKKLEEE YSSLKKVHES VVHDQRGLES EFASKENS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099829.12e-33homeobox-leucine zipper protein ATHB-40
SwissprotO232086e-29ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLW9RLH14e-32W9RLH1_9ROSA; Homeobox-leucine zipper protein ATHB-40
STRINGXP_010099829.16e-33(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-22homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]