PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G017082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | SRS | ||||||||
Protein Properties | Length: 232aa MW: 25102.9 Da PI: 8.9731 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 173 | 1.5e-53 | 52 | 208 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklss 93 +C dCGn+akk+C+++RCRtCC++r+f C+thv+stWvp+a rr+r + + + + ++ ++ +ask++r + +++++++ sst++s+ HL.SW.v1.0.G017082.1 52 RACSDCGNRAKKECKFRRCRTCCRARAFPCSTHVRSTWVPVASRRKRPAVEISGVGDGSSGSSFSASKKPRFNdSQTTAASYSSTSISN 140 57*********************************************999999988888888888888888762333444444555554 PP DUF702 94 aeskkeletss.......lPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154 + ++ ++ + lP++v+++a+fr+ rv++++dg+ e +aYq av i GhvfkG+LydqG++e HL.SW.v1.0.G017082.1 141 NALNTFTH--QdailkqsLPSKVHAPAIFRRHRVTAISDGDGEveVAYQVAVRICGHVFKGFLYDQGVDE 208 44333322..23467777********************97665449**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.7E-49 | 53 | 207 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.3E-23 | 54 | 95 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.6E-22 | 157 | 206 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MNQPVYCSSN HPLPLEPSSP NDAVFSYWKW RDQTNADVDD GGGTATTVTS WRACSDCGNR 60 AKKECKFRRC RTCCRARAFP CSTHVRSTWV PVASRRKRPA VEISGVGDGS SGSSFSASKK 120 PRFNDSQTTA ASYSSTSISN NALNTFTHQD AILKQSLPSK VHAPAIFRRH RVTAISDGDG 180 EVEVAYQVAV RICGHVFKGF LYDQGVDEKN GDYSSSSPIV VLSTPNPSSP S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q94CK9 | 7e-37 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A2P5BWY9 | 2e-73 | A0A2P5BWY9_PARAD; Uncharacterized protein | ||||
STRING | cassava4.1_013960m | 7e-48 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 8e-22 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
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