PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G016927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25573.1 Da PI: 7.5775 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.7e-10 | 74 | 120 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++f eL ++l + + +K++K iL Av+ +++L HL.SW.v1.0.G016927.1 74 KACREKMRRDKLNDRFLELGSILDPG---RPPKMDKGVILGDAVRMVNQL 120 678**********************8...89***************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.76 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.95E-8 | 73 | 125 | No hit | No description |
Pfam | PF00010 | 9.0E-8 | 73 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-13 | 73 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-8 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-15 | 76 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 8.65E-5 | 125 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSSAGNPNWV FDYSLIEDLP NLEPPGFTWP SHSFTDPTDL SVDFDDSFGN DEGLKETGSR 60 KRVRPGSCST TGSKACREKM RRDKLNDRFL ELGSILDPGR PPKMDKGVIL GDAVRMVNQL 120 RMESQKLKQS NESLQDKINE LKAEKNELRD EKQRLKAEKD ILDKQVKAMT AQPSFMHPPA 180 MPPPFARPGH VVGGKLVPFV GYPGLSMWQF MPPAAVDTSQ DHVLRPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024018931.1 | 1e-127 | transcription factor bHLH115 | ||||
Swissprot | Q9FH37 | 7e-88 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2P5CVA0 | 1e-144 | A0A2P5CVA0_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | XP_008224874.1 | 1e-119 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-83 | bHLH family protein |