PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G016895.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

TCP

Protein Properties

Length: 401aa MW: 41605.3 Da PI: 9.7384

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G016895.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.7	8.4e-42	163	271	2	116
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ HL.SW.v1.0.G016895.1 163 APVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTL---- 247 7789*****************************************************************9997777777777633.... PP TCP 90 aaksaakskksqksaasalnlakesra 116 sa++sk++++s +sal+la+++++ HL.SW.v1.0.G016895.1 248 ---SAPPSKSAPHSFHSALALAHHHQS 271 ...333555555555555666665543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.3E-40	168	294	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	169	223	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MDLADLQSNN KNNNKVQQQQ HQQKQSSSSS SPSSHQFVVP FDGRSSTNSP FMGSISIQAG 60 LTHGHGATNT TSSTSTTALP SSSSSSSSGP TSSSSSSSSS TSTSTTTTAP PPPPHLVDAS 120 LAIATRSDSL PFNNPAPLSV DYSAKKNQQQ SIVPAATATA VAAPVKRSTK DRHTKVDGRG 180 RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSTLNISL 240 RSSGSTLSAP PSKSAPHSFH SALALAHHHQ SHYDEGFAHA GLMGFHHQQH HHQQPPLMTA 300 DQIAEALPSG GDNGGDSSEN YMRKRFREDL FKENSDTQGD QSGGGGSPSS NNNKSFKSSG 360 GGGGGGGGGG LQLPKQQPQD GSGSSGLLRP SNILPATAMW A

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MDLADLQSNN KNNNKVQQQQ HQQKQSSSSS SPSSHQFVVP FDGRSSTNSP FMGSISIQAG  60
LTHGHGATNT TSSTSTTALP SSSSSSSSGP TSSSSSSSSS TSTSTTTTAP PPPPHLVDAS  120
LAIATRSDSL PFNNPAPLSV DYSAKKNQQQ SIVPAATATA VAAPVKRSTK DRHTKVDGRG  180
RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSTLNISL  240
RSSGSTLSAP PSKSAPHSFH SALALAHHHQ SHYDEGFAHA GLMGFHHQQH HHQQPPLMTA  300
DQIAEALPSG GDNGGDSSEN YMRKRFREDL FKENSDTQGD QSGGGGSPSS NNNKSFKSSG  360
GGGGGGGGGG LQLPKQQPQD GSGSSGLLRP SNILPATAMW A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835543.1	1e-128	PREDICTED: transcription factor TCP8-like
TrEMBL	A0A2P5BJ32	1e-145	A0A2P5BJ32_PARAD; TCP transcription factor
STRING	cassava4.1_034188m	1e-112	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-53	TCP family protein