PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G016721.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YC | ||||||||
Protein Properties | Length: 245aa MW: 26529.8 Da PI: 4.8447 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.9 | 9.3e-56 | 48 | 152 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw++q ie++ dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trt HL.SW.v1.0.G016721.1 48 QLQMFWSYQrheIEQVIDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 136 89*****999999**************************************************************************** PP NF-YC 87 difdflvdivprdelk 102 difdflvdivprde+k HL.SW.v1.0.G016721.1 137 DIFDFLVDIVPRDEIK 152 *************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.71E-33 | 43 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-20 | 70 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.5E-37 | 71 | 148 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDGNNSNTTN PSAINTQQPQ ASPYPATGAG VPAAPVPFHH LLQQQQQQLQ MFWSYQRHEI 60 EQVIDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFAKA CELFILELTI RSWLHAEENK 120 RRTLQKNDIA AAITRTDIFD FLVDIVPRDE IKDEAALGGM VGTTASGVPY YYPPMGQPAG 180 APGGMMIGRP AVDPSGVYGQ PPSQAWQSVW QTAADDGSYG SGGSSGQGNL DGQSAFIWLS 240 CADS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-54 | 56 | 148 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138046.1 | 1e-129 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_008464428.1 | 1e-129 | PREDICTED: nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9SMP0 | 1e-107 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2P5FDC1 | 1e-132 | A0A2P5FDC1_TREOI; Nuclear transcription factor Y subunit C | ||||
STRING | XP_008464428.1 | 1e-128 | (Cucumis melo) | ||||
STRING | XP_004138046.1 | 1e-128 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11071 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 6e-85 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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