PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016390.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRF
Protein Properties Length: 422aa    MW: 46467.9 Da    PI: 10.6904
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016390.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.55.4e-24110153144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRCs++v+ ++k+CE H+hrgr+rsrk +e
  HL.SW.v1.0.G016390.1 110 DPEPGRCRRTDGKKWRCSKNVVHDQKYCEQHMHRGRQRSRKLVE 153
                           79***************************************987 PP
2WRC672.5e-21301337238
                   WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 
                            epgrCrRtDGKkWRC+r+v++++k+C rH+hrg ++
  HL.SW.v1.0.G016390.1 301 LEPGRCRRTDGKKWRCRRDVIPDQKYCARHMHRGAKK 337
                           59********************************876 PP
3QLQ34.56.4e-134579337
                   QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                          F+++Ql +Lk+Q l+y ++++++P+P +Ll++i+k
  HL.SW.v1.0.G016390.1 45 FSWDQLLQLKHQTLIYSHIVSGLPIPLRLLAPISK 79
                          9********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.0E-44379IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.9184479IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-84577IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.565110154IPR014977WRC domain
PfamPF088797.9E-21111153IPR014977WRC domain
PROSITE profilePS5166721.888300344IPR014977WRC domain
PfamPF088795.5E-19302340IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDFQTNPSPH SGVLRVRKRS EKEWTVVMHG DGGKPWIKRE SNCGFSWDQL LQLKHQTLIY  60
SHIVSGLPIP LRLLAPISKT LLPPLSTSIF NPYPFTGFSP RGFHFKNMVD PEPGRCRRTD  120
GKKWRCSKNV VHDQKYCEQH MHRGRQRSRK LVEVAEIGTS LSNTKMPDKS ISQSLQNSNS  180
NIPVSVGLQL MTTLSSNITS VSHANTTPSS SFSTKRVTNV IAPCIATTNT AAITKSNKNV  240
GNAGNDVGDK YFGTIGRSNN NNIHVGRHIS QGLGFSPKSV LHLQVIRRNG LYTDYRNGIE  300
LEPGRCRRTD GKKWRCRRDV IPDQKYCARH MHRGAKKLVK VFPPLPITTA SSAATDSAPR  360
LPSTAISCRV DPVSPDTKLS ISIQASPQLT NIGEKSDSST SSDTTISDTS IAAYTITKLP  420
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092861.21e-142growth-regulating factor 9
TrEMBLA0A2P5AMM31e-146A0A2P5AMM3_TREOI; Growth-regulating factor
STRINGXP_010092861.11e-140(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.15e-41growth-regulating factor 9