PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016122.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 396aa    MW: 44719.1 Da    PI: 7.0435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016122.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-162976148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+eEde l++ +++ G g+W+t +++ g+ R++k+c++rw +yl
  HL.SW.v1.0.G016122.1 29 RGPWTAEEDEVLAKFIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 76
                          89******************************99************97 PP
2Myb_DNA-binding46.39.5e-1587127648
                           HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  HL.SW.v1.0.G016122.1  87 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 127
                           89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-212078IPR009057Homeodomain-like
PROSITE profilePS5129416.1072476IPR017930Myb domain
SuperFamilySSF466892.81E-2826123IPR009057Homeodomain-like
SMARTSM007171.9E-122878IPR001005SANT/Myb domain
PfamPF002493.2E-142976IPR001005SANT/Myb domain
CDDcd001674.22E-103176No hitNo description
PROSITE profilePS5129424.40477131IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2479132IPR009057Homeodomain-like
SMARTSM007171.2E-1381129IPR001005SANT/Myb domain
CDDcd001674.78E-1187127No hitNo description
PfamPF002491.6E-1387127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MRKQSPSSTN GSGSSGKTTP CCSKVGIKRG PWTAEEDEVL AKFIRKEGEG RWRTLPKRAG  60
LLRCGKSCRL RWMNYLRPSV KRGHIAPDEE DLILRLHRLL GNRWSLIAGR IPGRTDNEIK  120
NYWNTHLSKK LINQGIDPRT HKPFNQTLDH HHHHHHQQQH HHDHHSNINK ASSSSSALIP  180
PACPNNKIQA PFLSTVPEEQ EEELMAPPST TTEHLHHQDH EAAATAQIII NEITNKENNN  240
GYNISFDDLL VGGGGGGGGH DDNNGDLYNH VGYENFGLRM IKSSANDHHL VNIMGNEDHQ  300
ENNNNNNNNN NNNHNHNHED LNYCSDDVLF SSFLNSIINE DAFLSGHHHD HHQQQQQQQQ  360
PVLLPNHHLH HQDPLLFPVI NNNSSSNGFC FDQPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-24291314105C-Myb DNA-Binding Domain
1msf_C2e-24291314105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021816704.11e-101transcription repressor MYB5-like
TrEMBLA0A2P5FJU61e-107A0A2P5FJU6_TREOI; GAMYB transcription factor
STRINGXP_006488922.16e-99(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-79myb domain protein 5