PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G016047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 264aa MW: 29453.5 Da PI: 6.7522 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.3 | 5.9e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC ++C++apyf++eq +++fa++hk+FGasnv+kll++lp ++r+ a+ ++ yeA+ar++dP+yG+v++i++lqqq+ HL.SW.v1.0.G016047.1 7 PCGACKFLRRKCIRGCIFAPYFCHEQgASHFAAIHKVFGASNVSKLLTHLPVSDRPGAAVTISYEAQARLKDPIYGCVSHIFALQQQVI 95 7*************************89************************************************************* PP DUF260 89 qlkaelallkee 100 +l+a+la++ke+ HL.SW.v1.0.G016047.1 96 NLQAQLASIKEQ 107 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.678 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGASHFAAI HKVFGASNVS KLLTHLPVSD 60 RPGAAVTISY EAQARLKDPI YGCVSHIFAL QQQVINLQAQ LASIKEQAAQ NFGNSSGSDS 120 GNPNEKYIKE VQNWFQSETN MMMTMPQFNP NMVTSETYNA SHAMPYTENK PAPLNSNSGG 180 SSSCENSMFG SEENNNDQFY NQNHSNSNNM GRFDEAYHYM SSLDSLQQGL NRQMDFQDYS 240 DDLHLHHHHH HHESVPFSYT RHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111895.1 | 1e-107 | LOB domain-containing protein 29 | ||||
TrEMBL | A0A2P5CNF8 | 1e-121 | A0A2P5CNF8_PARAD; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010111895.1 | 1e-107 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-64 | lateral organ boundaries-domain 29 |