PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015938.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 332aa    MW: 37403.2 Da    PI: 4.8425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015938.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-1957110356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  HL.SW.v1.0.G015938.1  57 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                           566899***********************************************9 PP
2HD-ZIP_I/II130.19.1e-4256148193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk + ++L++++e+L +
  HL.SW.v1.0.G015938.1  56 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGHLKANYDALKLSYDTLKHDNETLVK 144
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elke 93 
                           e++e
  HL.SW.v1.0.G015938.1 145 EIRE 148
                           9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.4E-1944114IPR009057Homeodomain-like
PROSITE profilePS5007117.44352112IPR001356Homeobox domain
SMARTSM003896.3E-1855116IPR001356Homeobox domain
CDDcd000861.50E-1657113No hitNo description
PfamPF000463.7E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-2059119IPR009057Homeodomain-like
PRINTSPR000319.6E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000319.6E-692108IPR000047Helix-turn-helix motif
PfamPF021832.9E-17112154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKRLSSDDSL GALMAVCPTT EEHSPSSNHV YGREFRSMLD GLDEEGCVEE SGHVSEKKRR  60
LSVDQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGH  120
LKANYDALKL SYDTLKHDNE TLVKEIRELK SKLQDEKSES NNLSVKEELH IGPTESENKH  180
AAHPDHHILP SEECKELNFE NLNDTNNGVV LEVSMFPDFN KDGSSDSDSS AILNDDINLN  240
TNISSSPNGA ISSTGVLQNH QLMSSPSPVA SASLNFNCSS SSSNCFQFQK AASFQPQFVK  300
IEEHNFFAEE ACNFFSDDQA PTLQWYCSDQ W*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651837.11e-155PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
TrEMBLA0A2P5AY581e-172A0A2P5AY58_PARAD; Homeobox protein
STRINGXP_008235150.11e-152(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-69homeobox protein 16