 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G015936.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 312aa MW: 34269.3 Da PI: 10.1531 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G015936.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 334.1 | 3.7e-102 | 1 | 285 | 1 | 300 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaav...aerd.........maflqrdkalaernk 72
mddd+ + rn+gyyep+ +k +lglqlmss+a +rd+k r+ + + ++++++ ++rd m++ rd+++++
HL.SW.v1.0.G015936.1 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAeQRDTKAflpgRDPTTVMVSSNGTFhtnHPRDcvvsdapvpMNY-VRDSWVNQ--- 83
9***9999*******99..**************78999999***999998999998884445666************.9*******... PP
GAGA_bind 73 alverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
++k+l++l+ +++ ++vl++t+ ++slq+ l+++ + r ++ + iee + +++ ++kk++ + pk+
HL.SW.v1.0.G015936.1 84 -----RDKFLNMLPPNTN--------YGVLPETSGAHSLQM-----LQPPEAAPR--DERVVGRIEEPVVNKESGPSKKRQGGGGAPKA 152
.....789******8886........9**************.....555444433..33456667776666666666666667788999 PP
GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
+k kk++k +k++++++ r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++SvyPLP+stkr
HL.SW.v1.0.G015936.1 153 PKVKKPRK----PKENNNSAL--VRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKR 235
99888888....333333333..579*************************************************************** PP
GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
rgaRiagrKmSqgafkk+LekLaaeGy+++np+DL+ +WA+HGtnkfvti
HL.SW.v1.0.G015936.1 236 RGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRAYWARHGTNKFVTI 285
*************************************************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM AEQRDTKAFL PGRDPTTVMV SSNGTFHTNH 60
PRDCVVSDAP VPMNYVRDSW VNQRDKFLNM LPPNTNYGVL PETSGAHSLQ MLQPPEAAPR 120
DERVVGRIEE PVVNKESGPS KKRQGGGGAP KAPKVKKPRK PKENNNSALV RVKPAKKSMD 180
VVINGIDMDI SGIPIPVCSC TGTPQQCYRW GCGGWQSACC TTNVSVYPLP MSTKRRGARI 240
AGRKMSQGAF KKVLEKLAAE GYNFANPIDL RAYWARHGTN KFVTISVLSF VGCWHSSAAS 300
VMRRGIFQVA L*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
