PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G015794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB | ||||||||
Protein Properties | Length: 516aa MW: 56882.2 Da PI: 7.3067 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl HL.SW.v1.0.G015794.1 5 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 52 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.1e-14 | 58 | 101 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ HL.SW.v1.0.G015794.1 58 RGPFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 101 89********************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-25 | 1 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.281 | 1 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-30 | 3 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 5 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.02E-12 | 8 | 52 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 56 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.421 | 57 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-12 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-13 | 58 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.17E-9 | 60 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
QKLRKGLWSP EEDEKLLNYI TKHGHGCWSS VPKLAGLQRC GKSCRLRWIN YLRPDLKRGP 60 FSQQEENLII ELHAVLGNRW SQIAAQLPGR TDNEIKNLWN SCIKKKLRQK GIDPNTHKPL 120 SEVENDIGKL DKASSMTNKA GNNNNENNST VKASSLGTLS NDHHHHHHHH LNLAESQPSI 180 TIDRYPLLEV SSATPPTQEF FIEKSDVVSN TTSSCRPSDF ASYFSFHSNN YGTTSSSQDQ 240 NNNNSMASFC FNINQSSTTS TRPPPSSNSN NLSPVHHHHH HQQQQQHDHH HHHQMISSLI 300 PPPVSSCSIF SSSPSSTTSS SSPTNPRVKP SISLPLSDHQ NPSTVSCEVN NNNGVVVQNW 360 EASTFSNNGS SSSSCNIELQ SQGNNFFDNS NSTTAAAATA AAATTTVPPN AANFSWGLVP 420 ESGTIKSDDP EDIKWSEYLH SPFLLGAASN NQNSSQPILY SNIVKPESHF TTGSNSTWHQ 480 NEHNHHHHQL QAASSEIMYT NKDLQRLAVA FGQTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 3 | 107 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007207615.1 | 1e-129 | transcription factor MYB86 | ||||
TrEMBL | A0A2P5DRA4 | 0.0 | A0A2P5DRA4_TREOI; MYB transcription factor | ||||
STRING | EMJ08814 | 1e-128 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 4e-81 | myb domain protein 50 |