PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G015741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TCP | ||||||||
Protein Properties | Length: 424aa MW: 44786.9 Da PI: 6.7428 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.8 | 2e-34 | 50 | 148 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssa 82 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + ++++s+++ HL.SW.v1.0.G015741.1 50 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELpawnpmtsC-------QPVASENAP 131 79**************************************************************544444441.......444444444 PP TCP 83 snsssg..........k 89 + ++++ HL.SW.v1.0.G015741.1 132 AVDTIAsvsrrnsssvT 148 43333322222221221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-30 | 50 | 175 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MGDYPPPPTT HQNQVAPITS SRLGIRGGGG GGGCGGEIVE VQGGHIVRST GRKDRHSKVC 60 TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI KKAKAAIDEL DELPAWNPMT 120 SCQPVASENA PAVDTIASVS RRNSSSVTAA AATATAEAMV GDGALNLQSQ NHMVDHSNSG 180 GFLPPSLDSD AIADTIKSFF SGSSSSSSPS TTSYAAANDS ISSELPTRFA DPILLHHQQQ 240 QHQAHQNEQA LYSGTTGFVG WSDHHHHHQS PAELSRLQRI VAWNGGGDTT TGHNNGGNND 300 GSSNTTGGGE SLGFIFNSLP VVQAPSPPLQ PFFGRSNHQF FTQRGPLQSS NTPSVRAWID 360 SSSSISMADH HNQQYSSMPP AAMGFISGSG FSPGFHIPAR IQGEEEHDGI SEKPSSASSD 420 SRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-21 | 57 | 110 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-21 | 57 | 110 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018849844.1 | 1e-122 | PREDICTED: transcription factor TCP4-like | ||||
TrEMBL | A0A2P5BA70 | 1e-126 | A0A2P5BA70_PARAD; TCP transcription factor | ||||
STRING | XP_004137216.1 | 1e-120 | (Cucumis sativus) | ||||
STRING | XP_004172687.1 | 1e-120 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-64 | TCP family protein |