PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015606.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 542aa    MW: 58783.1 Da    PI: 7.6981
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015606.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.8e-214590449
                          -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           n+sn qvtfskRr+g++KKA+EL++LC++e a+i+fs+  k++ +
  HL.SW.v1.0.G015606.1 45 ANESNLQVTFSKRRAGLFKKASELCTLCGVELAIIVFSPGKKVFSF 90
                          699************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.0073494IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-283493IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-2535114IPR002100Transcription factor, MADS-box
CDDcd002653.81E-3335109No hitNo description
PRINTSPR004048.7E-163656IPR002100Transcription factor, MADS-box
PfamPF003191.8E-234490IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-165671IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-167192IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAMEMMNNLN ITNNENNNDD DDNSNNNPNR RVSRGRQKVA MMKMANESNL QVTFSKRRAG  60
LFKKASELCT LCGVELAIIV FSPGKKVFSF GHSSVQYIID RYLNPQNYRI TPPQVNSGTL  120
QLIEAHRSAN VRELNQQLTH VVDQLDVERK RSNELNKARK ARVSLHWWEA PVETLNDLAH  180
LEHLKSAMEM LRRDTSQTAD QILIQTTTNT DSLLPPNFNN MNINAPSFYG VMTTVGGAGG  240
NGSGGGLPQL PSSASSFPNQ GGLQPNSNYH YYNNNNENNY NDNDVGFDGG VANSSSSSAA  300
ASTGSTSTDT PHLQSITSGG GNANHVNMPH MPQMQAMNSG GIVNNNHVNL QSQMQALASG  360
GSVNHVNLPP YMQVSASNGT LNHVNHVNLQ PHMSFSSVPN TQSSAPANTN YINMSAMPQM  420
MQPPNTSPVP SSTQQQPNTS PAPGSVNNHF NMSPMPHHMQ QPNTTSASGI VNHINMSPMQ  480
LANNNTSAGV TVNHVNHQRP TMQLPMLPQS LPPSSQLLLQ QPNSQGTHHV SNNVGYGHGF  540
F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-53AGAMOUS-like 62