PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015568.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 628aa    MW: 67620.6 Da    PI: 6.7465
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015568.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.7e-30358416259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+H h+
  HL.SW.v1.0.G015568.1 358 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCAEDRTILVTTYEGNHSHP 416
                           7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-32342418IPR003657WRKY domain
SuperFamilySSF1182905.49E-27350418IPR003657WRKY domain
PROSITE profilePS5081128.92352418IPR003657WRKY domain
SMARTSM007742.5E-35357417IPR003657WRKY domain
PfamPF031065.2E-26359416IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MAKGSGLSID SDPIGFFMHK PTVLNSFEED FSNHHHNKKI SNQNHLIRPA SSMDASTIHH  60
ERSPPHQTLQ FPVNLNCAHH KDSPEPSEEN NNRTVIDEMD FFAENRNRDI KPSPAHHHDI  120
VDHHKSFNDL IDFQMNVNTG LNLLTTNTSS DQSMVDDGVS NDAAADDKKP TTELVGLHTE  180
FQRVKSENQR LKNTLSQVTN NYNALQMHLC SLMQSRKSDG KVEDGNHDQY DDQNKLNGSG  240
NEGTVQPVVP RRFMDLGLAT NGEAEETSLS SSEERRSESV KNGHGGGGGG DELEKKEVNR  300
ALIAREDSPD QSSQAGWAPN KVPRTTSSGS VKDAEQTEAT MRKARVSVRA RSEAPMIADG  360
CQWRKYGQKM AKGNPCPRAY YRCTMASGCP VRKQVQRCAE DRTILVTTYE GNHSHPLPPP  420
AMAMASTTSS AARMLLSGSM SSSDGIMNSN FLARAILPCS SSMATISASA PFPTVTLDLT  480
QSPNPLHLQK PPQPPQFHFA LQQNSSSAPA AAAALLPLFG QAIYNNQSKF SGLQMSSLGQ  540
ENSLAPATMA ARLLGHQSFS SSSPPQSSLS DSVTAATAAI AADPNFTAAL AAAITSIISG  600
NHPNNVSNNN NNASNNGNTN ATNSNSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21344419175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811738.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-137WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A2P5CMD10.0A0A2P5CMD1_TREOI; WRKY domain containing protein
STRINGXP_010089474.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-102WRKY family protein