PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015168.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 548aa    MW: 60785.7 Da    PI: 5.338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015168.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.25.3e-1301765472374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           + lL  cA+a++++d+  +++l+++l++l+s +gdp+qRl ay++e+L a+la+s+s++ykal+++e +   s+e ++++++++e++P+
  HL.SW.v1.0.G015168.1 176 KGLLCICAQALAENDMLTTEWLISELRQLVSVSGDPLQRLGAYMLEGLVAKLASSGSSIYKALRCKEPA---SAELFSYMHILYEICPY 261
                           568999**************************************************************9...9**************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                           +kf+++ aN aI eav+ ++ vHiiDf+i qG+QW+ L++aL++Rp+gpp++RiT++++++s   +   le +g rL+k+Ae+++vpfe
  HL.SW.v1.0.G015168.1 262 FKFGYMSANGAIAEAVKDDSVVHIIDFQIVQGAQWMILIHALSTRPRGPPKIRITAIDDSTSAyaRGGGLEIVGLRLSKIAESCKVPFE 350
                           ***********************************************************998899999********************* PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                           fn+ +  + ++++le+L v++gEa+aVn++l+lh+++desv ++   +rd++L+l kslsPkvv++veqe+++n+++F  rf+e+ ++y
  HL.SW.v1.0.G015168.1 351 FNA-IDASASEVQLEDLGVRHGEAIAVNFALMLHHMPDESVGSQTpnHRDRLLRLAKSLSPKVVTLVEQELNTNTAPFYSRFVETYDHY 438
                           ***.6889********************************97766669***************************************** PP

                  GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                           +a+f+s+++ lpr+++eri+vE+++l+r+ivnv+ac g er+erhe l+kWr+r+++aGF+p+pls  +++++k+ll++++++ +++ee
  HL.SW.v1.0.G015168.1 439 MAVFESIDVILPRDHKERINVEQHCLARDIVNVIACDGPERVERHELLGKWRSRFTMAGFRPYPLSPLVNSTIKTLLQNYSEK-FTLEE 526
                           *********************************************************************************65.***** PP

                  GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                           ++g+l+lgW+d++++s +aWr
  HL.SW.v1.0.G015168.1 527 RDGALYLGWMDKAMISSCAWR 547
                           ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.39149528IPR005202Transcription factor GRAS
PfamPF035141.8E-127176547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MKQSQNYRIS NGSHRFLGQP DEEPESYCWA PIQNIDNLTG SKNSQDTHLS VKTFTQYCTL  60
ESSSGASSNP VQNSSSSVSF SPNGSPSSQP ETQSYPTYQH LSPDNACGSP VSHSCLTDDT  120
DDLRHKIREL ESVMLGTGSD FPEMYNISNQ VGQNAVSLEG DNWGRLMDMI SAADLKGLLC  180
ICAQALAEND MLTTEWLISE LRQLVSVSGD PLQRLGAYML EGLVAKLASS GSSIYKALRC  240
KEPASAELFS YMHILYEICP YFKFGYMSAN GAIAEAVKDD SVVHIIDFQI VQGAQWMILI  300
HALSTRPRGP PKIRITAIDD STSAYARGGG LEIVGLRLSK IAESCKVPFE FNAIDASASE  360
VQLEDLGVRH GEAIAVNFAL MLHHMPDESV GSQTPNHRDR LLRLAKSLSP KVVTLVEQEL  420
NTNTAPFYSR FVETYDHYMA VFESIDVILP RDHKERINVE QHCLARDIVN VIACDGPERV  480
ERHELLGKWR SRFTMAGFRP YPLSPLVNST IKTLLQNYSE KFTLEERDGA LYLGWMDKAM  540
ISSCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-601715471375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097275.10.0scarecrow-like protein 21
RefseqXP_024021934.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A2P5F8H60.0A0A2P5F8H6_TREOI; GRAS transcription factor
STRINGXP_010097275.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]