PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015048.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 743aa    MW: 80460.8 Da    PI: 5.7954
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015048.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.63.6e-1023897412374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           +++L ++Ae +++g+  laq +Larl++++sp g+p+qR+a+yf+eAL+  l++       +l+  + +    + ++ a+k+fse+sP+
  HL.SW.v1.0.G015048.1 389 IDQLSKAAELIETGNPVLAQGILARLNHHVSPLGKPFQRAAFYFKEALQLLLHN-------SLALPPFN---LIFKIGAYKTFSEISPV 467
                           6799*************************************************9.......56666665...89*************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                           l+f+++t+NqaIlea+eg +r+H+iDfdi++G+QW++++q+La R++g  sl+iT+++sp+++++ el  t+++L++fA+e+++ fe +
  HL.SW.v1.0.G015048.1 468 LQFANFTCNQAILEALEGFSRIHVIDFDIGYGGQWASFMQELALRNGGGGSLKITAFVSPSTHEEFELGFTQDNLKHFAAEINLAFELE 556
                           ***************************************************************************************** PP

                  GRAS 180 vlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           ++  ++l++   +  +++++gEa+aVnl ++  + +  ++sl+     vL++vk+lsPkvvv  e+ +d+++ +F +++++a++ ys l
  HL.SW.v1.0.G015048.1 557 IISLETLNSGsWPVPIHISEGEAIAVNLPISALSSY--PLSLPL----VLRFVKQLSPKVVVSLERGCDRTDVPFPHQIIHAFHSYSGL 639
                           *966666665246789**************877776..677776....***************************************** PP

                  GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                           ++sl+a    + ++ +k+E++ll++ i+++v  ++++     e+   Wr+ + ++GF+p+ +s+++++qa++l+++++++g++ve+++ 
  HL.SW.v1.0.G015048.1 640 LESLDAV-NVNLDALQKIEKFLLQPGIEKLVLSRHRS----PERTPPWRSSFLNSGFSPLVFSNFTESQAECLVQRTPVRGFHVEKKQS 723
                           ****665.3566999******************9998....9999******************************************** PP

                  GRAS 357 slvlgWkdrpLvsvSaWr 374
                           sl l+W++++L+s+SaWr
  HL.SW.v1.0.G015048.1 724 SLSLCWQRKELISASAWR 741
                           *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.848362721IPR005202Transcription factor GRAS
PfamPF035141.2E-99389741IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MKAMPLPFEE FQGKGVLDFF TSTTAASDSL LSSPPQQRPL KWNNLISKEN CYVGSTEPTS  60
VLDTRSSSSP PRSTSTLSSS LGSSGGGGCG NGGGTGSTDT TTGGVAPAPE TPSAAGAALE  120
EGKCGLGMED WESVLSESPG HDQSILRLMM ADVDDPSLGL NRLLQSESVS SQEMEFNAGG  180
FGVVDQGYGG FEPTSGNLMS SIIDPSLQGT TCSDFPFNST SNAQNNNSLR LGSGSNPMNP  240
MFSTSGNNLM SVSLSPLAFH QQQQQQQLVD SVDAKPQVFN PQMVINQNQA HLAQNPALLM  300
PLTYAQLQEH HAMSQSPAKR LNTGAVGTNF QLQKVQFPNS GQELFARGQE QQLQLLHQQR  360
PTMAVAKQKM LSAGAGEELA NHQLQQAFID QLSKAAELIE TGNPVLAQGI LARLNHHVSP  420
LGKPFQRAAF YFKEALQLLL HNSLALPPFN LIFKIGAYKT FSEISPVLQF ANFTCNQAIL  480
EALEGFSRIH VIDFDIGYGG QWASFMQELA LRNGGGGSLK ITAFVSPSTH EEFELGFTQD  540
NLKHFAAEIN LAFELEIISL ETLNSGSWPV PIHISEGEAI AVNLPISALS SYPLSLPLVL  600
RFVKQLSPKV VVSLERGCDR TDVPFPHQII HAFHSYSGLL ESLDAVNVNL DALQKIEKFL  660
LQPGIEKLVL SRHRSPERTP PWRSSFLNSG FSPLVFSNFT ESQAECLVQR TPVRGFHVEK  720
KQSSLSLCWQ RKELISASAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3140374118375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889409.10.0scarecrow-like protein 6
TrEMBLA0A2P5EBN00.0A0A2P5EBN0_TREOI; GRAS transcription factor
STRINGXP_008341645.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-144GRAS family protein