PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015043.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 599aa    MW: 65259.1 Da    PI: 7.142
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015043.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33246303260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  HL.SW.v1.0.G015043.1 246 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 303
                           8****************************************.***************85 PP
2WRKY105.92.1e-33423481159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnhe
  HL.SW.v1.0.G015043.1 423 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHE 481
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28237304IPR003657WRKY domain
PROSITE profilePS5081123.904240304IPR003657WRKY domain
SuperFamilySSF1182901.44E-25244304IPR003657WRKY domain
SMARTSM007741.3E-36245303IPR003657WRKY domain
PfamPF031061.3E-25246302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-37408483IPR003657WRKY domain
SuperFamilySSF1182904.05E-29415483IPR003657WRKY domain
PROSITE profilePS5081138.079418483IPR003657WRKY domain
SMARTSM007743.2E-39423482IPR003657WRKY domain
PfamPF031069.6E-26424481IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MASSSGSLDT SANSFPNFTF SAHPFMTTSF SDLLSSGTEE EPIAAAAADD SRRGLSDRIA  60
ERTGWGVPKF KSLPPPSLPI SPPSVSPSSY FAIPAGLSPA ELLDSPVLLN SSNILPSPTT  120
GRFASQVSSW KNSYGDNQQS VKQEQKNYSD FSFQTQTRPP TSSSSMFLPS HTTAQTAWTN  180
SFQEPTKQQN EYSSGKSTTK PEFASAQSFS SEIKSNNSVQ TNGGFQSEYS NNNYPQQAQA  240
LSRRSDDGYN WRKYGQKQVK GSENPRSYYK CTYPNCPTKK KVERSLDGQI TEIVYKGSHN  300
HPKPQATRRS SSSSSAAAPP AAALIQTSNL SNSEIPDQSY VSQGNGQMDS ATTPENSSIS  360
IGDEDFEQSS QKTKSGGDDL DEDEPDAKRW KREGENEGIS APGSRTVREP RVVVQTTSDI  420
DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NPGCPVRKHV ERASHDLRAV ITTYEGKHNH  480
EVPAARGSGG HSINRPLPSS NNNAVASIRP SAMAPHNMTN HNTNNNHLQN LTLPTSSEGQ  540
LPFTLEMLQS PGSYGFSGFG NSGTSSYMTQ SQLTDNVVYT KTKEEPRDDN TFLESLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37246484878Probable WRKY transcription factor 4
2lex_A4e-37246484878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021810565.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-143WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2P5AFD20.0A0A2P5AFD2_TREOI; WRKY domain containing protein
STRINGEMJ094890.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-112WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]