PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G015009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | G2-like | ||||||||
Protein Properties | Length: 488aa MW: 52633.3 Da PI: 7.6664 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 4.9e-32 | 298 | 351 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ HL.SW.v1.0.G015009.1 298 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 351 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-15 | 295 | 351 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-28 | 296 | 351 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 298 | 351 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.3E-7 | 299 | 350 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MPLEGIFIEA ASSTAAAVLP DLSLNISPPN TTSTCSSSAA AAALDDARFD LDLSCRRRES 60 DNHNSSTTCS SSSTATNTSK AHTDLSLGRL SLMSSASTLN GAGDPPPNPY QQHNPHPHHL 120 YNHTMNRGSG GGGGLSLLDV SADAFRPIKG IPVYHNRSFP FLSADNTRVV DHVKDPKMCF 180 YQMAPSLSGA AATPYFGGRG GGVLDPMSML SSPGLPNGSS VAAVAAYRAA RLNGLAAAAE 240 AYKSANNQLH HHHQLHQHHH HHLHHHNNQY GQTEISSHGT MRARFLPKLP TKRSMRAPRM 300 RWTSTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDKPAA 360 SSGQSDGSGE DEMSQMGMSG SDSTGGLRTQ YVDQRGPSDR SNLQPDQMDF QSSLWSNSSS 420 GREVWSSRNN SGDIDGLPLQ SSVISQQIQE CESTRVKSYV ENKNNFEGKN PSLEFTLGRP 480 GWQGEEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 299 | 353 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 299 | 353 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 299 | 353 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 299 | 353 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024024392.1 | 1e-167 | transcription repressor KAN1 isoform X2 | ||||
TrEMBL | A0A2P5FZU7 | 0.0 | A0A2P5FZU7_TREOI; KANADI transcription factor | ||||
STRING | XP_010101071.1 | 1e-165 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 3e-61 | G2-like family protein |