PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014865.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 443aa    MW: 48089.3 Da    PI: 9.6459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014865.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05628123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C++C+k F r  nL+ H r H
  HL.SW.v1.0.G014865.1  6 FICEICNKGFQRDQNLQLHRRGH 28
                          89*******************88 PP

2zf-C2H2130.0003283105123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+k +  +s+ k H +t+
  HL.SW.v1.0.G014865.1  83 WKCEKCSKKYAVQSDWKAHSKTC 105
                           58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.2E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
SMARTSM003550.022628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-778103No hitNo description
SMARTSM0035514083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK DQVKKKVYIC PEKSCVHHEP  60
GRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  120
KDSFITHRAF CDALAEESAR LTSVVSTNLS FGNSNNNNVD DHTNAITTSS TSSSTTIVNM  180
DHLTHGLGIM SGRTSSHGFQ LHQDHFNHHL SKSRLSLWLN QANSSSHNNN LINNNPMDYI  240
YSSSVPEMIQ NMGSTTSTSN TTLFGSCSTS VSSLVGLKEE SNRVLNNCSS SSVSSSSSKS  300
IIAPMSATAL LQKAAQMGST RSSSNPSFST TTTTTTSTSS PGVVMIMNSS SSSLLSSSAT  360
PSNVNVATNM AHHHHHGFLD GSNLRSLGNN MSLSSSNNGI ENGLTRDFLG SGSGGEVEQR  420
QFLSHNSFGS SAMGLSQFTG NH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3979148372Zinc finger protein JACKDAW
5b3h_F5e-3979148372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366218.11e-135zinc finger protein JACKDAW-like
SwissprotQ944L31e-99IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A2P5FV121e-177A0A2P5FV12_TREOI; TFIIH C1-like domain containing protein
STRINGcassava4.1_032876m1e-130(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.13e-85C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]