PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G014865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 443aa MW: 48089.3 Da PI: 9.6459 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.6e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H HL.SW.v1.0.G014865.1 6 FICEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ HL.SW.v1.0.G014865.1 83 WKCEKCSKKYAVQSDWKAHSKTC 105 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.0E-7 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 5.2E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 48 | 78 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 71 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.0E-7 | 78 | 103 | No hit | No description |
SMART | SM00355 | 140 | 83 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK DQVKKKVYIC PEKSCVHHEP 60 GRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR 120 KDSFITHRAF CDALAEESAR LTSVVSTNLS FGNSNNNNVD DHTNAITTSS TSSSTTIVNM 180 DHLTHGLGIM SGRTSSHGFQ LHQDHFNHHL SKSRLSLWLN QANSSSHNNN LINNNPMDYI 240 YSSSVPEMIQ NMGSTTSTSN TTLFGSCSTS VSSLVGLKEE SNRVLNNCSS SSVSSSSSKS 300 IIAPMSATAL LQKAAQMGST RSSSNPSFST TTTTTTSTSS PGVVMIMNSS SSSLLSSSAT 360 PSNVNVATNM AHHHHHGFLD GSNLRSLGNN MSLSSSNNGI ENGLTRDFLG SGSGGEVEQR 420 QFLSHNSFGS SAMGLSQFTG NH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-39 | 79 | 148 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-39 | 79 | 148 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027366218.1 | 1e-135 | zinc finger protein JACKDAW-like | ||||
Swissprot | Q944L3 | 1e-99 | IDD9_ARATH; Zinc finger protein BALDIBIS | ||||
TrEMBL | A0A2P5FV12 | 1e-177 | A0A2P5FV12_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | cassava4.1_032876m | 1e-130 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 3e-85 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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