PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014802.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YA
Protein Properties Length: 219aa    MW: 23909.6 Da    PI: 5.5884
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014802.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA49.11.8e-15180214136
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                           +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrk
  HL.SW.v1.0.G014802.1 180 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRK 214
                           69****************************.99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-4178217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115220.073179218IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-11181214IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860184204IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
KESNSMRSKS QNTDRLGLDS HAIPPSSVCG EPWWRNVSYM PAPMPLTGGN ASNSSSVECP  60
NGASESNEDQ SLSNDGPYEE DDDATKDSHV SASPQSGNCG QEYQIMQHVS STTPPVHGGC  120
LTQPTQLELV GHSIQSCASN PYQDVYFGGM MAAYGHQPMG YPPFYGMPQA RMPLPLEMAQ  180
EPVYVNAKQY QGILRRRQAR AKAELERKLI KSRKVEEL*
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102352.11e-116nuclear transcription factor Y subunit A-1
RefseqXP_024025217.11e-116nuclear transcription factor Y subunit A-1
RefseqXP_024025218.11e-116nuclear transcription factor Y subunit A-1
RefseqXP_024025219.11e-116nuclear transcription factor Y subunit A-1
SwissprotQ9LXV51e-55NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A2P5EUE41e-121A0A2P5EUE4_TREOI; Nuclear transcription factor Y subunit A
STRINGXP_010102352.11e-116(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.49e-60nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]