PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G014802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YA | ||||||||
Protein Properties | Length: 219aa MW: 23909.6 Da PI: 5.5884 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 49.1 | 1.8e-15 | 180 | 214 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrk HL.SW.v1.0.G014802.1 180 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRK 214 69****************************.99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-4 | 178 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 20.073 | 179 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.9E-11 | 181 | 214 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 184 | 204 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
KESNSMRSKS QNTDRLGLDS HAIPPSSVCG EPWWRNVSYM PAPMPLTGGN ASNSSSVECP 60 NGASESNEDQ SLSNDGPYEE DDDATKDSHV SASPQSGNCG QEYQIMQHVS STTPPVHGGC 120 LTQPTQLELV GHSIQSCASN PYQDVYFGGM MAAYGHQPMG YPPFYGMPQA RMPLPLEMAQ 180 EPVYVNAKQY QGILRRRQAR AKAELERKLI KSRKVEEL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102352.1 | 1e-116 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_024025217.1 | 1e-116 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_024025218.1 | 1e-116 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_024025219.1 | 1e-116 | nuclear transcription factor Y subunit A-1 | ||||
Swissprot | Q9LXV5 | 1e-55 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A2P5EUE4 | 1e-121 | A0A2P5EUE4_TREOI; Nuclear transcription factor Y subunit A | ||||
STRING | XP_010102352.1 | 1e-116 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 9e-60 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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