PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014704.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 310aa    MW: 34921.6 Da    PI: 7.8741
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014704.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.6e-2961111151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                           k+ien++nrqvtfskRrngi+KKA ELSvLCda+v++ii+ +++kl+ey++
  HL.SW.v1.0.G014704.1  61 KFIENQTNRQVTFSKRRNGIFKKAGELSVLCDAKVSLIIVPNNNKLHEYIT 111
                           79***********************************************86 PP
2K-box76.95.2e-26123221199
                 K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                           yq+++g++l+++++e +qq l++Lk+++ +L++++R++lG dL++Ls+ eL  Le+ +  s++ iR +Kn+ +++q e+++k++k+ +e
  HL.SW.v1.0.G014704.1 123 YQRTKGVDLWKSQYEAMQQTLRQLKAKNFELRTQIRQRLGYDLNDLSFHELSDLENSMLASVEAIRHRKNHKIKTQAETTKKRNKSWEE 211
                           78899999********************************************************************************* PP

                 K-box  90 enkaLrkkle 99 
                           +n  L +++ 
  HL.SW.v1.0.G014704.1 212 RNSVLVHEIH 221
                           *****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-3753112IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.89953113IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-3454146IPR002100Transcription factor, MADS-box
CDDcd002653.69E-3654132No hitNo description
PROSITE patternPS00350055109IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-245575IPR002100Transcription factor, MADS-box
PfamPF003194.0E-2362109IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-247590IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-2490111IPR002100Transcription factor, MADS-box
PfamPF014864.6E-18134220IPR002487Transcription factor, K-box
PROSITE profilePS5129713.139136226IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMSSDYKCEP IHNNSNTNAE ETQYHHPHRH RHHRAEEEEE EEDHDQSNKQ QKIGRGKTQI  60
KFIENQTNRQ VTFSKRRNGI FKKAGELSVL CDAKVSLIIV PNNNKLHEYI TPGANTKDML  120
DLYQRTKGVD LWKSQYEAMQ QTLRQLKAKN FELRTQIRQR LGYDLNDLSF HELSDLENSM  180
LASVEAIRHR KNHKIKTQAE TTKKRNKSWE ERNSVLVHEI HARCEDPPYG LVEDNEGAGY  240
ESAIALATGA SNLYAFRHHQ NSHSALHSGG AGGGSLITTS HSALHSGAGG GGGSGSGYDS  300
FDLRDLRLA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024180026.16e-85floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-80TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2P5FNX91e-120A0A2P5FNX9_TREOI; MADS-box transcription factor
STRINGXP_004287844.11e-80(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]