PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G014484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 274aa MW: 30474.1 Da PI: 9.753 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 48.7 | 1.5e-15 | 9 | 48 | 19 | 59 |
SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 + rsYY+Ct+++Cpvkk vers+ ++++ei+Y+++Hnh HL.SW.v1.0.G014484.1 9 DKNRSYYKCTHPTCPVKKIVERSH-YGQITEIIYKSNHNHV 48 568*********************.9**************6 PP | |||||||
2 | WRKY | 99.2 | 2.6e-31 | 142 | 200 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vkg+ +prsYY+Cts gC vkk+ver++ + k++++tYeg+Hnhe HL.SW.v1.0.G014484.1 142 LDDGYRWRKYGKKVVKGNSNPRSYYKCTSVGCIVKKHVERASGNVKAIITTYEGKHNHE 200 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 6.6E-7 | 6 | 49 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-10 | 7 | 47 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-11 | 7 | 50 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-10 | 9 | 50 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.59 | 12 | 50 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.7E-33 | 127 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-27 | 136 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.842 | 137 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-34 | 142 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-23 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MDTTGENMDK NRSYYKCTHP TCPVKKIVER SHYGQITEII YKSNHNHVKP QSNRRAGLGS 60 SAFSLGTPNE LFDPLSSVHG KSIELRETTS EVSTTVSSHG DADDDEPEAK RRKKLNYSSA 120 LSSGTVREPK IVIQIETDVD ILDDGYRWRK YGKKVVKGNS NPRSYYKCTS VGCIVKKHVE 180 RASGNVKAII TTYEGKHNHE VPAARNSNNH INSTGPNAPI PPITPNNSQS SSLKLPRNTT 240 IPKPQTQIQG PPPLFDRKPE FCNSDYLRPS FPGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-32 | 133 | 203 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-32 | 133 | 203 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111075.1 | 7e-99 | WRKY transcription factor SUSIBA2 | ||||
Swissprot | Q6IEQ7 | 1e-66 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A2P5CUG5 | 2e-99 | A0A2P5CUG5_PARAD; WRKY domain containing protein | ||||
STRING | XP_010111075.1 | 3e-98 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8349 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 2e-62 | WRKY DNA-binding protein 33 |
Publications ? help Back to Top | |||
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