PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G014206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | G2-like | ||||||||
Protein Properties | Length: 524aa MW: 57242.7 Da PI: 7.1221 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7.1e-32 | 312 | 367 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ HL.SW.v1.0.G014206.1 312 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 367 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.45E-17 | 309 | 370 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.355 | 309 | 369 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-28 | 310 | 370 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-26 | 312 | 367 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-7 | 314 | 365 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MMASPSELSL ECKPAHGYSM LLKSFGEHQH SHQQHHHLQQ QQPQVAQHDH THKLEDYLNR 60 LEEERLKIEA FKRELPLCMQ LLTSAVEASR QQLQDYRTNQ GPIRPVLEEF IPLKTSSSEG 120 SADQKITNAP DNKANWMTSA QLWSQSSSND GTKPQPTNNS NSNIVTPKEA DISFNVVSPK 180 LALDNKLSQR LNGPAGAFLP FSKDSNRNNN NSIPNQSFRP LPELALSAAT AEKDIMGEEN 240 HKCSSEAERR ENSGNNGNGG VVVETGKGGV AGNNNSSNIN GSDHHQGVQT NNNNNNNNNS 300 SSTTNNNQTH RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH 360 LQKYRLHTRR PSPQAPGTPA PQLVVLGGIW VSEYSAAAAH NGAQTALYSS HAASHAPPPH 420 YCAPPVPQDF YASQAQAQAQ GMPHHHALHH QLQMYKATSQ THSSPESDVR GAGGDRSESI 480 EDGKSESSSW KGESGDNGAE RKGLAALRED GEESNGSEIT LKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 312 | 365 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 312 | 365 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-13 | 312 | 365 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 312 | 365 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 312 | 365 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 312 | 365 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 312 | 365 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 312 | 365 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 312 | 365 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 312 | 365 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 312 | 365 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 312 | 365 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098958.1 | 0.0 | myb family transcription factor EFM | ||||
TrEMBL | A0A2P5AZB1 | 0.0 | A0A2P5AZB1_TREOI; GARP transcription factor | ||||
STRING | XP_010098958.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5466 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 4e-55 | G2-like family protein |