PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014104.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 333aa    MW: 36979.7 Da    PI: 5.1784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014104.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-1980128355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  HL.SW.v1.0.G014104.1  80 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 128
                           9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-3279137IPR001471AP2/ERF domain
SMARTSM003804.6E-3879142IPR001471AP2/ERF domain
PROSITE profilePS5103223.77579136IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2279137IPR016177DNA-binding domain
PfamPF008477.1E-1280128IPR001471AP2/ERF domain
PRINTSPR003679.0E-128091IPR001471AP2/ERF domain
CDDcd000182.23E-3380137No hitNo description
PRINTSPR003679.0E-12102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MCGGAIIAEF IHGNRGRRVS SSDIWPNSSF VKLNNNTNNF FDSGFSQCVH DEPAPVKRST  60
PSSDGVQAEK PPKRPRKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD  120
REARKIRGKK AKVNFPNEED SYSKIQPSRP NQTQTRLVNP NHNTPLYQQP RDTLPQSFEI  180
EFGYDLINQI GAFPSNGLNN AGADRAVTSG DEHSGSGSEG AYSSTGLILG YNQNAAGEKG  240
GLIQTRVKKE EEPIKEAKVS KEVIPIEDEE DNEVQKLSEE LMAFENYMKF YQIPYLDGQS  300
AASSNVQESD VGQLWSFDDD DDVPSSESSP SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2280136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21801381574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891869.11e-124ethylene-responsive transcription factor ERF071
TrEMBLA0A2P5AVG41e-165A0A2P5AVG4_PARAD; AP2/ERF transcription factor
STRINGEMJ016171e-116(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.22e-32related to AP2 2