PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G013997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 39009.9 Da PI: 4.4535 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.6e-12 | 180 | 223 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L HL.SW.v1.0.G013997.1 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 223 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-15 | 177 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-12 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 180 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-15 | 181 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.89E-5 | 181 | 228 | No hit | No description |
CDD | cd04873 | 0.00907 | 273 | 314 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MELTQHGFLE ELLAPRRDNW SSFSSGLSDQ FYPSGWSFDS FEENPVLAIS NPPFAGFSNP 60 TEPNSECPFV EQTLYPFVDH GSVVLMPELD SPYTKNNNDT PSFPSQEDYP SMVEDEEFGF 120 LGCENQSCLE ENKNISGCCK VEMEQQTTEL PAFNIGLCSG EKKTTTSRPK KLEGQPSKNL 180 MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERISKL QEEGMEDGNN 240 QINLLGISKE LKPSEVLVRN SPKFDVERRD IDTRIDICCA AKPGLLLSTV NTLEALGLEI 300 QQCVISCFND FSMQASCSEG AQERTLISSE DIKQAIFRNA GYGGRCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 189 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890522.1 | 0.0 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 9e-92 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A2P5FH73 | 0.0 | A0A2P5FH73_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_008236674.1 | 1e-171 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 6e-94 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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