PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013997.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 348aa    MW: 39009.9 Da    PI: 4.4535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013997.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12180223654
                           HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  HL.SW.v1.0.G013997.1 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 223
                           589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-15177233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9180223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-15181235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-5181228No hitNo description
CDDcd048730.00907273314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MELTQHGFLE ELLAPRRDNW SSFSSGLSDQ FYPSGWSFDS FEENPVLAIS NPPFAGFSNP  60
TEPNSECPFV EQTLYPFVDH GSVVLMPELD SPYTKNNNDT PSFPSQEDYP SMVEDEEFGF  120
LGCENQSCLE ENKNISGCCK VEMEQQTTEL PAFNIGLCSG EKKTTTSRPK KLEGQPSKNL  180
MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERISKL QEEGMEDGNN  240
QINLLGISKE LKPSEVLVRN SPKFDVERRD IDTRIDICCA AKPGLLLSTV NTLEALGLEI  300
QQCVISCFND FSMQASCSEG AQERTLISSE DIKQAIFRNA GYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890522.10.0transcription factor bHLH93-like
SwissprotQ9LSL19e-92BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2P5FH730.0A0A2P5FH73_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008236674.11e-171(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-94beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]