PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G013803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C3H | ||||||||
Protein Properties | Length: 303aa MW: 31942.9 Da PI: 9.7279 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 106 | 131 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+G++C+FaHg+ HL.SW.v1.0.G013803.1 106 KTRLCNKFNSAEGCKFGEKCHFAHGE 131 8***********************96 PP | |||||||
2 | zf-CCCH | 30.4 | 6.6e-10 | 269 | 293 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t++C++f + G C +G+rC+FaHg HL.SW.v1.0.G013803.1 269 FRTKICNNFTK-GSCTFGERCHFAHG 293 589********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.8 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.042 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-5 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-7 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.7 | 45 | 62 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-14 | 102 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-8 | 103 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.385 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0027 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-6 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 4.53E-15 | 158 | 238 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.1E-15 | 167 | 236 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.9E-12 | 167 | 237 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.34 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.7E-11 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.37E-13 | 170 | 232 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-14 | 267 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.032 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-7 | 268 | 294 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-8 | 268 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-7 | 269 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEYEGGRKRA RVDASFNGNG GFKKSKPEME SFTHGIGSKS KPCTKFFSTA GCPFGEGCHF 60 LHYVPGGLKT VSHLINVGGS PALPPSARNP VAPPSFPDSS SPQAVKTRLC NKFNSAEGCK 120 FGEKCHFAHG EWELGKPTLP SYEDHRGRMG GRMEPPPSHG LAASFGASST AKISVDSSLA 180 GAIIGKNGVN SKQICRATGA KLSIREHETD PNLRNIELEG TFDQIKQAST MVRELIVNVG 240 SSMAANHTKS HHGGGGGGTG HSSGSGSNFR TKICNNFTKG SCTFGERCHF AHGAHELRKT 300 GI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875946.1 | 1e-164 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-109 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | W9QK76 | 1e-155 | W9QK76_9ROSA; Zinc finger CCCH domain-containing protein 14 | ||||
STRING | XP_010087387.1 | 1e-156 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-81 | C3H family protein |