PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013637.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 758aa    MW: 85353.1 Da    PI: 7.0974
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013637.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.91.1e-1183847551374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA+av+++d++ a++lL+++++++sp gd  qRla++f+ +L+arla+++s++yk l  ++ts    +++l+a++l+  ++P
  HL.SW.v1.0.G013637.1 384 LRSLLIQCAQAVAADDHRSANELLKQVRQHSSPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTS---AADVLKAYRLYLAACP 469
                           689*************************************************************888888...89************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + k+s++t N++Il+ +++++ vH+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g   +e++ etg+rL+ +Ae+++v+f
  HL.SW.v1.0.G013637.1 470 FRKISNFTSNRTILDTAAKATSVHVIDFGILYGFQWPTLIQRLSLREGGPPKLRITGIEFPQTGfrPAERVDETGRRLKAYAETFNVSF 558
                           ***************************************************************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ++n+ +ak++e+++leeL+++++E l+Vn+ ++ ++l+desv+ es+r++vL+l+k+++P+++++   +  +n++ F++rf eal ++s
  HL.SW.v1.0.G013637.1 559 DYNA-IAKKWETITLEELKIDRDELLIVNCLYRGKNLPDESVTAESARNRVLDLIKKIKPDLFIHGITNGAYNAPFFVTRFREALFHFS 646
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           alfd le  +pr + er+ +E+e++gre+ nv+aceg er+er et+++W+ r++++GF + p+s +++k a   +++++ + + ++e+
  HL.SW.v1.0.G013637.1 647 ALFDILELIVPRWEPERMLIEKEIFGREALNVIACEGCERVERPETYKQWQIRIMRSGFVQQPISRYIMKRAAEKVKTTYHRDFVIDED 735
                           ********************************************************************************999****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +g+l++gWk+r ++++S+W+
  HL.SW.v1.0.G013637.1 736 NGWLLQGWKGRIIFAISSWK 755
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.202358735IPR005202Transcription factor GRAS
PfamPF035143.9E-116384755IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MDQSLRGYTG SGNGVVHLGK KPLSVISSHN NIMAETRFNN HNHSVFLDHS HRGFHYPQPD  60
LTPTTENSIS SLTHDVNSPE DCDFSDTVLK YISQMLMEEE DHEDKTSIVE ESSDLRAAEK  120
SFYEVLGKKY PPSPEQSHVF QNGESPDENF TAKSNNYVHS SCYSNEYLVD NNTLYQNLDN  180
YTSQLHCLPD FGVSHSSYSS SNSAISSLDG LLDSPSSIVI QAPDHHLCSE NRSMWQFRKG  240
VEEASRFLPT QNDLVGNVEA NELLALVPSK FATAEVSVKS EKKNESSPGG SRGRKNPCSD  300
VEDLEEGRSS KQAAIYIEST LRSKMFDLVL LCSLGDGREH LTSFRQTLQS DLTKSMQQTG  360
QIKGLNVGKG RGKRQGRKKE VVDLRSLLIQ CAQAVAADDH RSANELLKQV RQHSSPFGDG  420
SQRLASCFAD GLEARLAGTG SQIYKGLINK RTSAADVLKA YRLYLAACPF RKISNFTSNR  480
TILDTAAKAT SVHVIDFGIL YGFQWPTLIQ RLSLREGGPP KLRITGIEFP QTGFRPAERV  540
DETGRRLKAY AETFNVSFDY NAIAKKWETI TLEELKIDRD ELLIVNCLYR GKNLPDESVT  600
AESARNRVLD LIKKIKPDLF IHGITNGAYN APFFVTRFRE ALFHFSALFD ILELIVPRWE  660
PERMLIEKEI FGREALNVIA CEGCERVERP ETYKQWQIRI MRSGFVQQPI SRYIMKRAAE  720
KVKTTYHRDF VIDEDNGWLL QGWKGRIIFA ISSWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-503887558375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111448.20.0scarecrow-like protein 9
RefseqXP_024031224.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2P5DVS60.0A0A2P5DVS6_TREOI; GRAS transcription factor
STRINGXP_010111448.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein