PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013624.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 409aa    MW: 46807.1 Da    PI: 4.3456
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013624.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88.4e-34211132103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Flkk ye+++de+++++isw+++++sfv++d+ +f+  +LpkyFkhsnf+SF+RQLn+YgF+k++ ++         w F+++ F +++
  HL.SW.v1.0.G013624.1  21 FLKKCYEMVNDESTDSIISWNDTNDSFVIWDMIQFSVGLLPKYFKHSNFSSFMRQLNIYGFRKIHPDR---------WMFANEGFIRDQ 100
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i r+k++
  HL.SW.v1.0.G013624.1 101 KHLLKNICRRKHS 113
                           *********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.18E-3217110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-3517110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-4917110IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2921110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGKSSEIGDG GSGSAASIAP FLKKCYEMVN DESTDSIISW NDTNDSFVIW DMIQFSVGLL  60
PKYFKHSNFS SFMRQLNIYG FRKIHPDRWM FANEGFIRDQ KHLLKNICRR KHSHDPDQRK  120
AHAHQQKEHH PEESDEKVED VLWREVENLK IDKSALAQEL VKLRQYQETA DNKMLVLGDR  180
LQGMEKNQQQ MLSFLVMAVQ SPGLFVQLLQ PKENNWRMSE AGNMLEEVTE DDNPAASDGM  240
IVRYLPSPNE TLSPVFTSTS AAEKPSETSS YPDGTQDFFL NSDFMKILMD EKLSPLETHS  300
QFILPELADD SSWEQLLLAS PFRDNNKDPK DDEETYNTGM EDLTLSEIPL DDCRNFDYLE  360
QMEQSHNFGM EPTVYEGQFE LSHNMESLET LNEQMGLLSS EPENNGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-21211011129Heat shock factor protein 1
5d5v_B2e-21211011129Heat shock factor protein 1
5d5v_D2e-21211011129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093311.11e-177heat stress transcription factor A-8
TrEMBLA0A2P5D4890.0A0A2P5D489_TREOI; Heat shock transcription factor
STRINGXP_010093311.11e-177(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-101heat shock transcription factor A8