PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G013394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28052.7 Da PI: 5.4945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.2e-13 | 58 | 100 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A+eYI++L HL.SW.v1.0.G013394.1 58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 100 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.596 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.77E-18 | 52 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.21E-13 | 54 | 105 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-17 | 57 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-11 | 58 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MENIGEEYNH YWETTMFLQT EELDHSWGGG LEDAAFSGDY DSSSPDGAAS SAASKNIVSE 60 RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIEYIQEL HEQERRIQAE IIELESNNKG 120 SKKNLGYDFD QELPILLRSK KKKIDQQPYD SSGSRCSGSI SPIEDLELRV TYMGEKTLVV 180 SLTCSKRTDT MVKLCEVFES LKLKIITANI TAFSGRLSKT VIIEDLSNYC IWQQKRTSDN 240 SLLPCKY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 9e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 9e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 9e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 9e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 9e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 9e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 9e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358594.2 | 1e-120 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 7e-82 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2P5EZP8 | 1e-128 | A0A2P5EZP8_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_008358594.1 | 1e-119 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 7e-60 | bHLH family protein |