PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013143.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 225aa    MW: 25918.3 Da    PI: 6.5556
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013143.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.71.4e-27104188186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+++ev+aLi++r+++e++++++ +k+  Wee+s  m + g++r +k+Ckekw+n+nk++kk + + kkr s + +tcpyf++le
  HL.SW.v1.0.G013143.1 104 RWPEDEVQALIALRTDLEHKFQTTDSKGCIWEEISVGMYSMGYNRAAKKCKEKWDNMNKYFKKPNGSGKKR-SANGKTCPYFRSLE 188
                           8********************************************************************98.66667******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.95797161IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.7E-4101162IPR009057Homeodomain-like
CDDcd122035.33E-24103166No hitNo description
PfamPF138376.9E-21103190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVTKVMEKQE EMHNQLIDMV KKMERERILR EEAWKQMEME RMKRDELVRT QETSRSLALI  60
SFLQNLLGEE IQIPEPVSQP FMEENRVGRI DAQADTKCNS ENKRWPEDEV QALIALRTDL  120
EHKFQTTDSK GCIWEEISVG MYSMGYNRAA KKCKEKWDNM NKYFKKPNGS GKKRSANGKT  180
CPYFRSLESL YKNGVANSGI GDSTPNNGDE VRSEKESGES PYTG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022927335.16e-88trihelix transcription factor GT-2 isoform X1
TrEMBLA0A2P5EXN01e-101A0A2P5EXN0_TREOI; Octamer-binding transcription factor
STRINGXP_004139609.11e-82(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-52Trihelix family protein