PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G013103.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 323aa MW: 36408.1 Da PI: 4.4166

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G013103.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k HL.SW.v1.0.G013103.1 86 KKRRLSANQVQFLEKNFELENKLEPERKVQLAKELGLQPRQVAVWFQNRRARYK 139 55689************************************************9 PP
2	HD-ZIP_I/II	127.6	5.1e-41	86	177	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkrrls++qv++LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy++Lk++yd+lk + L ke e+L++e HL.SW.v1.0.G013103.1 86 KKRRLSANQVQFLEKNFELENKLEPERKVQLAKELGLQPRQVAVWFQNRRARYKTKQLEKDYDSLKASYDRLKYDYGILLKESETLKNE 174 9**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ HL.SW.v1.0.G013103.1 175 VNS 177 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-19	70	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	81	141	IPR001356	Homeobox domain
SMART	SM00389	3.3E-17	83	145	IPR001356	Homeobox domain
CDD	cd00086	6.21E-17	84	142	No hit	No description
Pfam	PF00046	3.6E-16	86	139	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	88	149	IPR009057	Homeodomain-like
PRINTS	PR00031	5.6E-6	112	121	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	116	139	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.6E-6	121	137	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-14	141	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MASGKVYGGS NMSILLQDDR LPCNSDVLKS LWIPSSSSSF QGSKSMLSFE SVGGGDSTDG 60 SFFQPHDKDD DNVDDDYDGC FHQPGKKRRL SANQVQFLEK NFELENKLEP ERKVQLAKEL 120 GLQPRQVAVW FQNRRARYKT KQLEKDYDSL KASYDRLKYD YGILLKESET LKNEVNSLNE 180 KLLSEEKDTK KNSENTEPEN PIVKTVVSET VSNVATMVVC KHEDASSAKS DVFDSDSPNY 240 AENYCSILEP ADSSHMFEPT DQSDYSQDED DNNNKNSSNC NLMSQSFLPP PLPLSLPCIP 300 KFEACCNFGF QVEDQAFNFW SY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARYKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894877.1	1e-134	homeobox-leucine zipper protein HAT5
TrEMBL	A0A2P5FQF3	1e-158	A0A2P5FQF3_TREOI; Octamer-binding transcription factor
STRING	XP_007157405.1	1e-125	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-33	homeobox 1