PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G013058.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 769aa MW: 87774.1 Da PI: 6.7357

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G013058.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.8	7e-32	80	167	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s ++s+r+g+i++r+ vCs+eg+r+e +++ +++r+r++tr+gCka+++vkk+ +gkw+v+kl++eHnHel+ HL.SW.v1.0.G013058.1 80 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREASET--RSKRQRTVTRVGCKAQMTVKKQASGKWVVSKLVKEHNHELV 166 9***************************************9988..999***********************************8 PP FAR1 91 p 91 p HL.SW.v1.0.G013058.1 167 P 167 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-29	80	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-30	289	379	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.682	573	605	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.1E-10	578	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-7	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MDNDDVVDFD SEHPDDGTYH HFDDDDGDGD DSYEDDDGGI AQDGSSSSAR YNASEGGGGD 60 HNLEPYEGME FDSEQSARMF YNSYARRVGF STRVSVYQRS RRDGSIICRQ IVCSREGFRR 120 EASETRSKRQ RTVTRVGCKA QMTVKKQASG KWVVSKLVKE HNHELVPPDK VHSLRSHRHV 180 SGSARSLIDT LQAAGMGPSG VMSVLIKESG GVNNVGFTKV DCQNYMSSSR QRSLGNGGQL 240 LFDYLKRKQE EDPQFFCAIQ GDNTENSTGN IFWADAKSRS NYNFFGDTVT FDTTYRTNRY 300 RVPFAPFTGW NHHGQPVLFG CALLLNESES SFVWLFQTWL AAMSGRQPIS ITTDQDRIIR 360 SAVLQVFPKT RHRFCKWNVF REAQEKLSDV YLWHPNFEAE FFRCINSTET VDDFESCWES 420 LVQRYNLGDN DWLLSMYNAR QQWVPVFLRD AFFGEMSTTQ ASDNINSFFD GYINASTTIQ 480 ALIKQYEKAV ASRHEKEVKA DYETINTTLV LKTPSPMEKQ AAKIYTKIIF TKFQEELFET 540 LAYPATIVDD TGLETMYRVA NFGEEHKARF VKFNVFEKKA RCSCQMFEFS GITCRHILAV 600 FRVTNVLTLP SHYILKRWTR NAKSGIFIDE HALGLLSSNS QDSSAARYEN LRREAIKYVE 660 EGTESDHVYN AAMECLHVAA KKVASAKVQV PRVLQKSTCG DSQHQQLHES YYSLDQDRKI 720 KELTAELEDA SQRCEAYRAK LLAVLKDMEE RKLKISVNVQ NVRLNLRF*

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MDNDDVVDFD SEHPDDGTYH HFDDDDGDGD DSYEDDDGGI AQDGSSSSAR YNASEGGGGD  60
HNLEPYEGME FDSEQSARMF YNSYARRVGF STRVSVYQRS RRDGSIICRQ IVCSREGFRR  120
EASETRSKRQ RTVTRVGCKA QMTVKKQASG KWVVSKLVKE HNHELVPPDK VHSLRSHRHV  180
SGSARSLIDT LQAAGMGPSG VMSVLIKESG GVNNVGFTKV DCQNYMSSSR QRSLGNGGQL  240
LFDYLKRKQE EDPQFFCAIQ GDNTENSTGN IFWADAKSRS NYNFFGDTVT FDTTYRTNRY  300
RVPFAPFTGW NHHGQPVLFG CALLLNESES SFVWLFQTWL AAMSGRQPIS ITTDQDRIIR  360
SAVLQVFPKT RHRFCKWNVF REAQEKLSDV YLWHPNFEAE FFRCINSTET VDDFESCWES  420
LVQRYNLGDN DWLLSMYNAR QQWVPVFLRD AFFGEMSTTQ ASDNINSFFD GYINASTTIQ  480
ALIKQYEKAV ASRHEKEVKA DYETINTTLV LKTPSPMEKQ AAKIYTKIIF TKFQEELFET  540
LAYPATIVDD TGLETMYRVA NFGEEHKARF VKFNVFEKKA RCSCQMFEFS GITCRHILAV  600
FRVTNVLTLP SHYILKRWTR NAKSGIFIDE HALGLLSSNS QDSSAARYEN LRREAIKYVE  660
EGTESDHVYN AAMECLHVAA KKVASAKVQV PRVLQKSTCG DSQHQQLHES YYSLDQDRKI  720
KELTAELEDA SQRCEAYRAK LLAVLKDMEE RKLKISVNVQ NVRLNLRF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020118.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P6PBY1	0.0	A0A2P6PBY1_ROSCH; Putative transcription factor FAR family
STRING	XP_004301609.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]