PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G012687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YC | ||||||||
Protein Properties | Length: 214aa MW: 23566.6 Da PI: 10.3052 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.7 | 1.7e-15 | 105 | 195 | 9 | 99 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 + e+ +d k +++P+ ri++i+++d+ +i+ ea l+ ka e fi ++ ++ a + ++++l +++av++ + +dfl d vp HL.SW.v1.0.G012687.1 105 EPEEGEDAKMNKFPMERIRRIVRSDDSDMRITNEAVFLVNKATEKFIENFCGEAYACAIKDRKKSLAYKHLSSAVSKQKRYDFLSDFVP 193 46788999********************************************************************************9 PP NF-YC 98 rd 99 ++ HL.SW.v1.0.G012687.1 194 EK 195 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.58E-19 | 77 | 188 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-17 | 116 | 179 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.5E-24 | 117 | 194 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MASSKKSVSE NNTPAATQTK RKKKTAGSAN AKKNDNTTTK TKTKTKTNTL SINGTVNYDE 60 VPATPSSSSD SHPAVENGVV ITKNVTSVTK SNNGKQKGKR ERKEEPEEGE DAKMNKFPME 120 RIRRIVRSDD SDMRITNEAV FLVNKATEKF IENFCGEAYA CAIKDRKKSL AYKHLSSAVS 180 KQKRYDFLSD FVPEKVKAVD ALAERKLLEA EAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2byk_A | 1e-13 | 102 | 198 | 5 | 102 | CHRAC-16 |
2byk_C | 1e-13 | 102 | 198 | 5 | 102 | CHRAC-16 |
2bym_A | 1e-13 | 102 | 198 | 5 | 102 | CHRAC-16 |
2bym_C | 1e-13 | 102 | 198 | 5 | 102 | CHRAC-16 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890660.1 | 1e-61 | DNA polymerase epsilon subunit 4 | ||||
TrEMBL | A0A2P5DEY0 | 5e-80 | A0A2P5DEY0_PARAD; Transcription initiation factor | ||||
STRING | XP_008358413.1 | 1e-60 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-23 | nuclear factor Y, subunit C10 |