PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G012562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10772.5 Da PI: 9.2561 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.2 | 6.7e-12 | 12 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll ++v ++ g W++++ + +k+c++rw++yl HL.SW.v1.0.G012562.1 12 KGAWTREEDDLLRECVDKYREGKWHLVPPRAD---VEKSCRLRWLNYL 56 79******************************...46**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-17 | 6 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.727 | 7 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-8 | 11 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-10 | 12 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.72E-18 | 13 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-6 | 14 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-6 | 59 | 84 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MEDSSSRQAI KKGAWTREED DLLRECVDKY REGKWHLVPP RADVEKSCRL RWLNYLKPGV 60 KRGEFAVDEV DLLLRLHKLL GNKYVRLCTI M* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019427402.1 | 1e-34 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 9e-31 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | Q9M717 | 5e-34 | Q9M717_PETHY; An2 truncated protein | ||||
STRING | Cagra.0463s0005.1.p | 2e-34 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 1e-29 | myb domain protein 114 |
Publications ? help Back to Top | |||
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