PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G012491.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 27218.1 Da PI: 8.5948 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.9 | 1.8e-32 | 159 | 217 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ HL.SW.v1.0.G012491.1 159 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHHGCNVKKQVQRLTKDEGVVVTTYEGMHTHP 217 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-33 | 144 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 151 | 218 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.585 | 154 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-38 | 159 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-26 | 160 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MENYQMLFPC SSSSMAVSGY PAHVVSSTME SSQNNESAFS TGTAMEGLGG RISHGFLGLG 60 TENQNQNQNQ NYQNHQHLHH RDDQTAKMMT MMMMNNNKGH HDHDDHGDDD DQEQMGKKSI 120 SSSSAGTTNN CNNNDKKKGV KKVKKPKYAF QTRSQVDILD DGYRWRKYGQ KAVKNNRFPR 180 SYYRCTHHGC NVKKQVQRLT KDEGVVVTTY EGMHTHPIEK HTDNFEHILN QMHIYTPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-27 | 149 | 216 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-27 | 149 | 216 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869717.1 | 1e-76 | probable WRKY transcription factor 75 | ||||
Refseq | XP_015871944.1 | 1e-76 | probable WRKY transcription factor 75 | ||||
TrEMBL | A0A2P5FC72 | 2e-71 | A0A2P5FC72_TREOI; WRKY domain containing protein | ||||
STRING | XP_007161664.1 | 3e-71 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1156 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 8e-56 | WRKY DNA-binding protein 75 |