PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G012342.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARR-B
Protein Properties Length: 615aa    MW: 67041.1 Da    PI: 6.7766
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G012342.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.75.2e-28234287155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  HL.SW.v1.0.G012342.1 234 KPRVVWSVELHQQFVSAVNQL-GFDKAVPKRILELMNVPGLTRENVASHLQKFRL 287
                           79*******************.********************************8 PP
2Response_reg80.27e-27511591109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+vdD+ + +++++q+l++ +y +v+++ +++ al+ll+ek+  +D++l D+ mp+mdG++ll++   e  +lp+i+++a g  + + 
  HL.SW.v1.0.G012342.1  51 VLVVDDDTTCLRIVEQMLRRCNY-HVTTCPQATVALKLLREKKgyFDVVLSDVHMPDMDGYKLLEHVGLEM-NLPVIMMSADGRTSAVM 137
                           89*********************.***************999999**********************7654.8**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + ++ Ga d+l Kp+ +eel +
  HL.SW.v1.0.G012342.1 138 KGIRHGACDYLIKPIREEELKN 159
                           *******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.5E-4248187No hitNo description
SuperFamilySSF521726.4E-3648182IPR011006CheY-like superfamily
SMARTSM004484.2E-3049161IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.2350165IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2351159IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.90E-2652164No hitNo description
PROSITE profilePS5129410.658231290IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-30231292IPR009057Homeodomain-like
SuperFamilySSF466892.15E-19232291IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-24234287IPR006447Myb domain, plants
PfamPF002498.3E-8236285IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAALQRVAQS SVSTVASSYA SCKGSGLASS NCATVVDDVV VSVQFPVGLK VLVVDDDTTC  60
LRIVEQMLRR CNYHVTTCPQ ATVALKLLRE KKGYFDVVLS DVHMPDMDGY KLLEHVGLEM  120
NLPVIMMSAD GRTSAVMKGI RHGACDYLIK PIREEELKNI WQHVVRKKWS ENKDFEQSGS  180
LEDNDRQKRV NDDTDLASSI NEETEGLKGQ KRRSNSKEED DSELENDDPS ASKKPRVVWS  240
VELHQQFVSA VNQLGFDKAV PKRILELMNV PGLTRENVAS HLQKFRLYLK RLSGGVTQQQ  300
SGISSAFGGS VEPNVKLASL GRFDIQALAT SGQIPPQTLA ALHAELLCRP GGNLVQGLDQ  360
PSLLHVAMQG SKRVPVEHGL PFGQPLVKCQ PNIFKQFPQS MVSVDDASSR YGAWMSNSLG  420
TVGPNNNVGV LSSPNSNFLM DILQQQRQEQ HKQQPQLQHQ SMLPESGRSI NVQPSCLVVP  480
SQSSATPGSS STTMSSLDAN SSTCGQNSIV TTGDARLSPR LVPNIADIRC SYGAKSCEML  540
DQGPLRNLGI VGKEMCFPSR FAMDELESPM NLNHGNVQLE IHGYPIKQEP SMDFNDNAKV  600
GVPCMTQVHC GAAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22230293164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206212LKGQKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088184.10.0two-component response regulator ORR21
SwissprotA2XE311e-156ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-156ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2P5E8E30.0A0A2P5E8E3_TREOI; Two-component response regulator
STRINGXP_010088184.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-119response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]