PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G012189.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 252aa    MW: 28257.1 Da    PI: 9.2258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G012189.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-0887137355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           r+h  +E +RR+++  + + Lr+llP  +    ++K s ++   +  +YIk+Lq
  HL.SW.v1.0.G012189.1  87 RKHRDIEMQRRQEMAARHASLRSLLPLeL---IKGKRSISDHIHEGARYIKQLQ 137
                           68*************************78...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.27E-482141No hitNo description
PROSITE profilePS5088811.27484136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-885156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-587137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-587152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MFPNLHRSEE LCFQISPNPQ KKNRNSSEDQ ILDHASLEDN AFYFNNYKEI ITSSQCPKSL  60
PNCCTLVNHN STTVTHNSSD NKSKKMRKHR DIEMQRRQEM AARHASLRSL LPLELIKGKR  120
SISDHIHEGA RYIKQLQLKI KELDAKRENL KKYYYLSDSR SIIGPSTYHD HHGHGGAGSS  180
SSSTPLSQDH LLRVQPCGGG LEIVISSTGD FGGASVLPLS KILQVILQEG LCLISCISTK  240
VNGRLLHTIK SE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109067.12e-65transcription factor bHLH120 isoform X1
RefseqXP_024029678.12e-65transcription factor bHLH120 isoform X1
RefseqXP_024029679.12e-65transcription factor bHLH120 isoform X1
RefseqXP_024029680.12e-65transcription factor bHLH120 isoform X1
RefseqXP_024029681.14e-66transcription factor bHLH120 isoform X2
TrEMBLA0A2P5D9K22e-99A0A2P5D9K2_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010109067.16e-65(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-34bHLH family protein