PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G012139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 330aa MW: 36243 Da PI: 6.0317 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.1 | 6e-38 | 37 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l ++ re+am++++++++ara Pv G++ +i++l +++e HL.SW.v1.0.G012139.1 37 ACAACKYQRRKCAPDCILAPYFPHDSHRQFLNAHKLFGVSNITKIIKQLdSPAAREQAMRTIIFQSDARAAHPVGGCYHIIQELLRKIE 125 7************************************************55666*********************************** PP DUF260 89 qlkaelallkee 100 +kael+l+++ HL.SW.v1.0.G012139.1 126 ATKAELDLVNQD 137 *******99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.868 | 36 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-36 | 37 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MSLNPPTTTT TTTTTSNSSL TSSSSSSKGN GNGNGQACAA CKYQRRKCAP DCILAPYFPH 60 DSHRQFLNAH KLFGVSNITK IIKQLDSPAA REQAMRTIIF QSDARAAHPV GGCYHIIQEL 120 LRKIEATKAE LDLVNQDLAV YRAAAAAAAV PPQPQGVPSH HHMDDHHLAM YNNDKIISNM 180 HHDHHHHQFL HSHVIGVDGS DQLQASQYDL VQDDVSSWVV QDSCIDVKPS VGGCGVDDHD 240 DQDLHVKPLL EIPSDEKIIN GIPANFEPHH HHHQRVDEAM LMRTVEDDNV GLKEEDENDQ 300 YSIQQNDNGG DGNDLRDAAT LFTLKNCTT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-26 | 33 | 141 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-26 | 33 | 141 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5FEC7 | 1e-114 | A0A2P5FEC7_TREOI; Lateral organ boundaries domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-49 | LOB domain-containing protein 22 |