PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011945.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family STAT
Protein Properties Length: 714aa    MW: 80242.9 Da    PI: 4.78
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011945.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT183.23.5e-572213421122
                  STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfei 89 
                           ldvv+l++  qpv+k++evvasLly d+g++ve+++d eapLL+s+dG+ef+s+d+p+kll+GrasfklkisqLsskc nrLfri+f++
  HL.SW.v1.0.G011945.1 221 LDVVFLDTSDQPVSKEMEVVASLLYLDNGEPVERTSDGEAPLLASFDGIEFASYDKPIKLLHGRASFKLKISQLSSKCQNRLFRIRFHL 309
                           89*************************************************************************************** PP

                  STAT  90 pklkkypfleavskpirCisrsrntrsssltkk 122
                           p++k+ypf+ea+s pir isr++ntr ss+++k
  HL.SW.v1.0.G011945.1 310 PNMKTYPFFEAFSPPIRSISRNQNTRVSSTMWK 342
                           *****************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.19E-525172IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.109.2E-6606661IPR000980SH2 domain
SuperFamilySSF555501.89E-7610675IPR000980SH2 domain
PROSITE profilePS500019.796614713IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MGDEAMEREN YLALKDLRVE IEREDGSFSL CFWIYLTNST TFPVTLLQKV PQDGSSHSPL  60
LVINEKEVML FPLLILHNEV QNSSSPALSS EVPRASVEIE FPLEKWVHFG CEVLIDCIRL  120
HIDGECVGDK SLSSIFEKES SVNGSGKITL VSGGGDEVNE QGYIYNIEVL STTSSTTDHF  180
AKDPPVQLSI DKSSSSEIEE GQGGIWSIVG GKASCRRNFS LDVVFLDTSD QPVSKEMEVV  240
ASLLYLDNGE PVERTSDGEA PLLASFDGIE FASYDKPIKL LHGRASFKLK ISQLSSKCQN  300
RLFRIRFHLP NMKTYPFFEA FSPPIRSISR NQNTRVSSTM WKRSNSAPHQ ISQSPGVDED  360
MMDVDQNSSH ETKPSPLSKR FRLGQDRIST TVRADPTLEA LDDECNSHSR TTNNKVEDVF  420
MTDSTVGPEN FDDEDNSSYE SGSIEARNSA PKSTSSTRNP VSDTTIFKYC LAGLTEKSLL  480
LKEIAHSASN KELLDFANQV SLYSGCSHHR NQIIMAKQLV EEGTKVWNSI SQNNNRVQWE  540
SVAFEIEEYF MKIACCSSRS LTQQDFDLLK KIAGCQEYVA QENFEQMWCW LYPVAYTLSR  600
DWINTMWSST SPRWIEGFIT KEEAELSLQG PKSFQEPGTF ILRFPTSRSW PHPDAGSLVV  660
TYIGSDYTLR HKLLSLDHLY SNCASEDKDV KPLQDILLEE PELSRLGRII RSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028241.10.0SH2 domain-containing protein A
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A2P5D9360.0A0A2P5D936_PARAD; STAT transcription factor
STRINGXP_010106738.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]