PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011848.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 522aa    MW: 57577.1 Da    PI: 6.8163
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011848.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.8e-3467121155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  HL.SW.v1.0.G011848.1  67 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 121
                           79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.84964124IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-3265122IPR009057Homeodomain-like
SuperFamilySSF466896.63E-1766122IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-2367122IPR006447Myb domain, plants
PfamPF002498.8E-1069120IPR001005SANT/Myb domain
PfamPF143791.2E-9172194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF143791.7E-10241266IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSSMYHHHHP HHLSGKNINM HVSTSRMSTI PPERHLFLQG GAGNGGAAAA AGGGHGDAGL  60
VLSTDAKPRL KWTPDLHERF VEAVNQLGGA DKATPKTVMK LMGIPGLTLY HLKSHLQKYR  120
LSKNLHGQAT SPTKIGTVGG GPVVERISEA MSANHMNNLS IINGPQTNNR GFHINETLQM  180
QIEVQRRLHE QLEVHIYIRF CFFFLLFWLV HVRIGLMFRS INLITFCFCF FGDDDDELNQ  240
VQRHLQLRIE AQGKYLQAVL EKAQETLGRQ NVGTVVGLEA AKVQLSELVS KVSTQCLNSA  300
FQAPPLELTP CPNPSPGRGR GQGGGGGRAG QPNDCSVDSC LTFDHGSQKD QEIIAHHNNT  360
NGMVLRAYHN TNNSAITNTT TTTSFFDSKE GNNTTSSTPE EKLDHNNMFL RRERRVFSIE  420
RSGLSMSIGG NNHDIRWDST EDHNSFSTGS RALALDSVKV DNDEEDEDED DENEKVSQTC  480
STRSSVPNFF AAKLDLNAHH NDQNDSSSNC KQFDLNGFSW S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-2267123157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2267123157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2267123157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2267123157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104961.11e-138myb-related protein 2 isoform X1
TrEMBLA0A2P5AJ571e-176A0A2P5AJ57_PARAD; Octamer-binding transcription factor
STRINGXP_010104961.11e-137(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-91G2-like family protein