PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G011848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | G2-like | ||||||||
Protein Properties | Length: 522aa MW: 57577.1 Da PI: 6.8163 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 5.8e-34 | 67 | 121 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl HL.SW.v1.0.G011848.1 67 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 121 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.849 | 64 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-32 | 65 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-17 | 66 | 122 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-23 | 67 | 122 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.8E-10 | 69 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-9 | 172 | 194 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Pfam | PF14379 | 1.7E-10 | 241 | 266 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MSSMYHHHHP HHLSGKNINM HVSTSRMSTI PPERHLFLQG GAGNGGAAAA AGGGHGDAGL 60 VLSTDAKPRL KWTPDLHERF VEAVNQLGGA DKATPKTVMK LMGIPGLTLY HLKSHLQKYR 120 LSKNLHGQAT SPTKIGTVGG GPVVERISEA MSANHMNNLS IINGPQTNNR GFHINETLQM 180 QIEVQRRLHE QLEVHIYIRF CFFFLLFWLV HVRIGLMFRS INLITFCFCF FGDDDDELNQ 240 VQRHLQLRIE AQGKYLQAVL EKAQETLGRQ NVGTVVGLEA AKVQLSELVS KVSTQCLNSA 300 FQAPPLELTP CPNPSPGRGR GQGGGGGRAG QPNDCSVDSC LTFDHGSQKD QEIIAHHNNT 360 NGMVLRAYHN TNNSAITNTT TTTSFFDSKE GNNTTSSTPE EKLDHNNMFL RRERRVFSIE 420 RSGLSMSIGG NNHDIRWDST EDHNSFSTGS RALALDSVKV DNDEEDEDED DENEKVSQTC 480 STRSSVPNFF AAKLDLNAHH NDQNDSSSNC KQFDLNGFSW S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-22 | 67 | 123 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-22 | 67 | 123 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-22 | 67 | 123 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-22 | 67 | 123 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104961.1 | 1e-138 | myb-related protein 2 isoform X1 | ||||
TrEMBL | A0A2P5AJ57 | 1e-176 | A0A2P5AJ57_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_010104961.1 | 1e-137 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-91 | G2-like family protein |