PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011761.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 401aa MW: 45047.2 Da PI: 6.7027

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011761.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.5e-09	49	96	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL ++l ++ +K++Ka+iL+ +++ +k+L HL.SW.v1.0.G011761.1 49 LQKADREKLRRDRLNEHFIELGSVLDPD----RPKNDKATILTDTIQLLKDL 96 56778*****************9997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-14	46	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.503	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-12	46	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-8	47	100	No hit	No description
Pfam	PF00010	2.6E-7	49	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-8	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MNQLQHDEFI QSPNPPSDPR LPSTSVRSQP SSSQRPEGET KDGTVARKLQ KADREKLRRD 60 RLNEHFIELG SVLDPDRPKN DKATILTDTI QLLKDLTSQV DKLKAEYTML NEESRELTLE 120 KNDLREEKTS LKSDIENLNV QCQQRVRTMF PWAAMDHSVV MAPTSYPYPV PMPMPQGPIP 180 MHPHMQPYPY YGNQNPGVIP NPCSTFVPYI TPTTLVEQQS QQYVTPIVQP VSRSNVSGKQ 240 DSRNKSSGES KIEKSEDSSD VATNLELKTP GSATDQDSGQ GQSQRYVSKE NKITERSSSS 300 RCSSSRSVQD SSSNSIEGQK RWPRSKILSH HLNSNNCFLV CTESVLMKAA DKVHNPHKPL 360 TTYLGEDSHH SIHILPTLVF LPCTTTWQNE EDPHDYLAGN *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MNQLQHDEFI QSPNPPSDPR LPSTSVRSQP SSSQRPEGET KDGTVARKLQ KADREKLRRD  60
RLNEHFIELG SVLDPDRPKN DKATILTDTI QLLKDLTSQV DKLKAEYTML NEESRELTLE  120
KNDLREEKTS LKSDIENLNV QCQQRVRTMF PWAAMDHSVV MAPTSYPYPV PMPMPQGPIP  180
MHPHMQPYPY YGNQNPGVIP NPCSTFVPYI TPTTLVEQQS QQYVTPIVQP VSRSNVSGKQ  240
DSRNKSSGES KIEKSEDSSD VATNLELKTP GSATDQDSGQ GQSQRYVSKE NKITERSSSS  300
RCSSSRSVQD SSSNSIEGQK RWPRSKILSH HLNSNNCFLV CTESVLMKAA DKVHNPHKPL  360
TTYLGEDSHH SIHILPTLVF LPCTTTWQNE EDPHDYLAGN *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015893436.1	1e-158	transcription factor bHLH121-like
Swissprot	Q9LT23	5e-94	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2P5ED01	1e-176	A0A2P5ED01_TREOI; Basic helix-loop-helix transcription factor
STRING	EOX97758	1e-147	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-76	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]