PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G011680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 360aa MW: 40075 Da PI: 6.231 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 7.9e-14 | 161 | 212 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i+ A+e++k+L+ HL.SW.v1.0.G011680.1 161 QRMTHIAVERNRRKQMNEHLAVLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 212 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-16 | 159 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-12 | 159 | 216 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 159 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.123 | 160 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-11 | 161 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-10 | 166 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MALEALPNSN ELFNFVIYDT ISATPCSCQG SSATTTNWLC NENNDSCATN STKPHHHNLH 60 NNDHQVGALE SSLLVSRKLQ MGAEEGGEDD KSGLGGGARC DDDYDDNNNE EEEQGQGQGQ 120 GQGQGHGRMM MRRQPSLGVV VRKKRKRKPR VCKNKEEAET QRMTHIAVER NRRKQMNEHL 180 AVLRSLMPDS YVQRGDQASI VGGAIEFVKE LEHLLQSLEA QKLQVLQGMN NNRELVDDDD 240 HNKESCNIDY TWSQISNKYT SKTKAAIADI EVTLIETHAS LRIFTRRSPR QLSRLIAGFQ 300 SLHLTVLHLN VTTLNPLVLY SVSVKVEEAC LLSSVDDIAA AVHHMLRIIE EEAAMPMCC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 146 | RKKRKR |
2 | 141 | 147 | RKKRKRK |
3 | 142 | 147 | KKRKRK |
4 | 161 | 172 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN646080 | 0.0 | FN646080.1 Humulus lupulus mRNA for basic helix-loop-helix transcription factor (bHLH1 gene), cultivar Osvald's 72, clone 2512. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096553.1 | 1e-128 | transcription factor bHLH71 | ||||
Swissprot | Q9C7T4 | 7e-68 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | E3PA31 | 1e-170 | E3PA31_HUMLU; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010096553.1 | 1e-128 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10644 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46690.1 | 2e-63 | beta HLH protein 71 |
Publications ? help Back to Top | |||
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