PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011672.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 293aa MW: 32642.6 Da PI: 8.9888

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011672.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H HL.SW.v1.0.G011672.1 43 YECKTCNRSFPSFQALGGHRASH 65 99**********99999998887 PP
2	zf-C2H2	13.4	0.00024	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H HL.SW.v1.0.G011672.1 144 HECSICGAEFTSGQALGGHMRRH 166 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.8E-13	42	67	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.741	43	70	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.06	43	65	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.74E-8	43	65	No hit	No description
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.74E-8	139	166	No hit	No description
Pfam	PF13912	4.1E-13	143	168	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.868	144	171	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	144	166	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	146	166	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MQQRVGDNNH MHNKSRDNRK FLEATQAAAA VNKAGAGYNN YAYECKTCNR SFPSFQALGG 60 HRASHKKPKT MVADQTAENK RNHLFGFPSD DEDQTQFKTS NNNNNNSSTA LSLQLSNNRS 120 STINSNNNNL YGSTNFVNKA SKVHECSICG AEFTSGQALG GHMRRHRAPV AGSTTSTALS 180 LTTSANIPPP TTTQLMSLDH HHQPQHQSDL DHEQRQQPQH HRLHQHQQHQ TNKTRSVLSL 240 DLDLNLPAPE DDQREPKFGF VAKQQQQQQQ QQQQQQSSTL VFSAPALVDC HY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103498.1	6e-76	zinc finger protein ZAT5
TrEMBL	A0A2P5AGK9	8e-93	A0A2P5AGK9_PARAD; TFIIH C1-like domain containing protein
STRING	XP_010103498.1	2e-75	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	6e-37	C2H2 family protein