PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011541.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

G2-like

Protein Properties

Length: 459aa MW: 50313 Da PI: 8.5246

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011541.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5e-32	278	331	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ HL.SW.v1.0.G011541.1 278 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 331 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-15	275	331	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-28	276	331	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-23	278	331	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-7	279	330	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNAK PTPSWRRSSA GAGAATSTEE EVDLGFWKRA LDSQNFSISS 60 SMAAKPDKYH HNSNSNNNIN NNTSSSNHSN SSSCFFDLSL SNNPRLVSNS SSENKSLFLH 120 QNQHHSNNHF YNHGNNIGDN LFHSNSASTS GSSTITNNAF PHHQNQLLLH PHAPFQHLLH 180 HQQQGGGGGL GQELGFLRPI RGIPVYHQNH PPPSSSFPFS HTLETTANSL SSSVNGTNTT 240 TSSNPFQSHH HQAAAAAGLM RSRFLSHRFP AKRSMRAPRM RWTTTLHARF VHAVELLGGH 300 ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDRAAA SSGQSDAYEN GSSGDTTEDL 360 MFDIQNTRRS EQSPQQGRSS GQDKDYNNPA LWCNSSREAW LHGKPKDSIG GNVPSLDDDQ 420 KDMDPKCLSY ERISSSDGSS PTNSPKKPNL EFTLGRAL*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNAK PTPSWRRSSA GAGAATSTEE EVDLGFWKRA LDSQNFSISS  60
SMAAKPDKYH HNSNSNNNIN NNTSSSNHSN SSSCFFDLSL SNNPRLVSNS SSENKSLFLH  120
QNQHHSNNHF YNHGNNIGDN LFHSNSASTS GSSTITNNAF PHHQNQLLLH PHAPFQHLLH  180
HQQQGGGGGL GQELGFLRPI RGIPVYHQNH PPPSSSFPFS HTLETTANSL SSSVNGTNTT  240
TSSNPFQSHH HQAAAAAGLM RSRFLSHRFP AKRSMRAPRM RWTTTLHARF VHAVELLGGH  300
ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDRAAA SSGQSDAYEN GSSGDTTEDL  360
MFDIQNTRRS EQSPQQGRSS GQDKDYNNPA LWCNSSREAW LHGKPKDSIG GNVPSLDDDQ  420
KDMDPKCLSY ERISSSDGSS PTNSPKKPNL EFTLGRAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	279	333	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	279	333	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	279	333	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	279	333	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	279	333	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	279	333	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	279	333	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	279	333	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	279	333	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	279	333	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	279	333	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	279	333	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096928.1	1e-151	probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	4e-75	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2P5EIM7	0.0	A0A2P5EIM7_TREOI; KANADI transcription factor
STRING	XP_010096928.1	1e-151	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-73	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]