PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011445.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 630aa    MW: 72344.9 Da    PI: 7.0331
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011445.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.34.8e-29127212187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+l+L+e+r+++++r++++++k+plW+++s+ m +e+g++rs k+Ckek+enl k+ykk+keg+ ++  ++ +++++f+qlea
  HL.SW.v1.0.G011445.1 127 RWPRQETLTLLEIRSRLNSRFKDTNQKGPLWDQISRIMaEEHGYQRSGKKCKEKFENLYKYYKKTKEGKARK--QDGKHYRFFRQLEA 212
                           8*************************************999*****************************96..66778*******85 PP
2trihelix45.42.2e-14440521274
              trihelix   2 WtkqevlaLiearr........emeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                           W ++e+   ie+ r        ++e +++  +k ++  W e+++km+  gfersp +Ckekwe+l+ + + i+e++kkr+++
  HL.SW.v1.0.G011445.1 440 WNEEEISSFIELIRstnclggaSVEGSVGFiSKENESVWVEIASKMACLGFERSPAECKEKWESLSVQVRMINESNKKRRED 521
                           ***********999566666665666665446899*******************************************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.166120185IPR017877Myb-like domain
SMARTSM007170.094124187IPR001005SANT/Myb domain
PfamPF138379.6E-20127213No hitNo description
CDDcd122034.69E-21127192No hitNo description
PROSITE profilePS500907.422432505IPR017877Myb-like domain
SMARTSM007171.7436507IPR001005SANT/Myb domain
PfamPF138372.3E-12438523No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEDQFVGIPA EFRQLMAMRT EQPQPLISPA RPHLQGEPFY QQSYGQTSSL GGVGLVDHQF  60
GSGHHNHHHF HHRFSTSSST ATAAAINMSG SNGVALYHHD FESSSGTHHG WMSNNIGSYE  120
SNTNTTRWPR QETLTLLEIR SRLNSRFKDT NQKGPLWDQI SRIMAEEHGY QRSGKKCKEK  180
FENLYKYYKK TKEGKARKQD GKHYRFFRQL EAIYGDQNSN QSPVLETHLS RSSLLYTDLG  240
SQEPQLNLDH HRHHQYPTQT KLSDNNNSLS FSINNSSDQF ETSSSDNGED RDRGSIKMDD  300
DHQKMKGVVR PSRKKSSWKA KVEEFVDSQM KKIMETQETW MEKMFQNVMD KEEKRVAEEE  360
ECRKKEAAQF DQKINEFWAR EKAWIEARDA AVMGALNKVT SGKGSSLLQL PSFPERLVLS  420
HNKDRIATRN YVHDHNNHSW NEEEISSFIE LIRSTNCLGG ASVEGSVGFI SKENESVWVE  480
IASKMACLGF ERSPAECKEK WESLSVQVRM INESNKKRRE DFNTSTSTTT PATGYSDHDR  540
DHHQDYHKGF NHHDDQHQDH DDRTLKQDHH HRIMGLRLMD EGLSPSSASN VGTTQMNPSN  600
CFNLLFGEGE NLWEKYGSLK LGKDRINEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110171.21e-167trihelix transcription factor PTL
TrEMBLA0A2P5EHX20.0A0A2P5EHX2_TREOI; TFIIB transcription factor
STRINGXP_010110171.11e-166(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-84Trihelix family protein